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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagtcactttttctgaaatcaaatgtattatttattatttgatcatcatttttttacctgtgcgcttctgatgctttactctctaattttatctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAAATACAAAGAAATGATGGATGCATATAGAGAGATGTTAACATACATAAAA

Basic information

species Zea mays
transcript GRMZM2G079196_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079196_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g17180.2 (Oryza sativa), 3'ss of exon 3
---gagtcac----tttttctgaaatcaaatgtattatttattatttgatcatcatttttttacctgtgcgcttctgatgctttactctctaatt-ttatctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAAATACAAAGAAATGATGGATGCATATAGAGAGATGTTAACATACATAAAA
   | || |     | |   ||||||||| |||||  | |||        ||    | |||||    |      |||| | |    ||| ||| | || |||||||||||| || |||||||| |||||||| || ||||| || |||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||| |||
aatgtgttataagttgtcagtgaaatcaagtgtatc-tgtatccaacagccactcatattttagagat------ctgacg-tcagttctgtaactcttttctttatagGGGTTTCAAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATGCCTATAGGGAGATGTTGACATACATCAAA

upper sequence: GRMZM2G079196_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA19G30100.1 (Glycine max), 3'ss of exon 3
gagtcactttttctgaaatcaaatgtattatttattatttgatcatcatttttttacctgtgcgct-tctgatgctttactctctaattttatcttta--tagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAAATACAAAGAAATGATGGATGCATATAGAGAGATGTTAACATACATAAAA
  ||      |  | | |  || | |  | | |   | |   || |||   |  ||      |  | | |  ||| || |    | || |||  |||    ||||||||||||||||| ||||||||||| |||||||| ||||  || || |  || ||||| |||||||| || ||  | |||||||| || ||||| |||
--gtagtgcatagtaatagtaa-tattatgtcttagaatcattcctcacagtgataataaaccattatgtattgcatttcatatttatcttacattttaccagGGGATTTAAAGCTCTAAAACAAACTGTGAAGCTTTATTATAGACTTGGAAGGTATAAAGAGATGATGGAAGCCTACCGGGAGATGTTGACTTACATTAAA

upper sequence: GRMZM2G079196_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G14170.1 (Glycine max), 3'ss of exon 3
gagtcactttttctgaaatcaaat-gtattatttattatttgatcatcatttttttacctgtg-----cgcttctgatgctttactctctaattttatctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAAATACAAAGAAATGATGGATGCATATAGAGAGATGTTAACATACATAAAA
      || ||||    | || || ||| ||||| |      ||| |  |  | | |   |        || | |    ||| | | ||    | |||  |   ||||||||||||||||| ||||| ||||||||||| || |||   ||||| |  || ||||| |||||||| || ||||| |||||||| ||||| || || 
------ctctttcatgtaccacatagtaatatttgtctgagaatctttctactgtgataagaaactactgcattttgcacttaattttcattctgtattctatcagGGGATTTAAAGCTCTAAAACAGACTGTCAAGCTATATTATCGACTGGGAAGGTATAAAGAGATGATGGAAGCCTATAGGGAGATGTTGACATATATTAAG

upper sequence: GRMZM2G079196_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA19G17660.2 (Glycine max), 3'ss of exon 3
gagtcactttttctgaaatcaaat-gtattatttattatttgatc--atcatttttttacctgtgcgcttctgatgctttactctctaattttatctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAAATACAAAGAAATGATGGATGCATATAGAGAGATGTTAACATACATAAAA
   |    | | |  | | || || ||| || || ||     |||  |  | | |   |        | | |    ||| | | ||    | ||| ||   ||||||||||||||||| ||||| |||||||||||  | |||   ||||| |   | ||||| |||||| | || ||||| |||||| | ||||| || || 
---tgtactctacatataccacatagtaatacttgtttgagaatcttactagtgtaagaaactattacattttgcacttaattttcattctgtattttatcagGGGATTTAAAGCTCTAAAACAGACTGTCAAGCTACATTATCGACTGGGAAGGCATAAAGAGATGATGAAAGCCTATAGGGAGATGCTGACATATATTAAG

upper sequence: GRMZM2G079196_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 3'ss of exon 3
gagtcactttttctgaaatcaaatgtattatttattatttgatcatcatttttttacctgt-gcgcttctgatgctttactctctaattttatctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAAATACAAAGAAATGATGGATGCATATAGAGAGATGTTAACATACATAAAA
 | | | ||||  || |     |      ||   ||    ||| ||    | || |  | |    | | |  |  |||| |   || ||  || ||   ||||||||||||||||| |||||||| ||||||||||| |||  | | ||||| || ||||| |||||||| || ||||| | |||||| || || || |||
-aattagttttgatggagaattacaatgcatgggtttagagattattccatattaatgtattattcctttatttatttatttattatttacattttatcagGGGATTTAAAGCTCTAAAACAAACAGTCAAGCTTTATTATCGGTTAGGGAAGTATAAAGAGATGATGGAAGCCTATAGGGTGATGTTGACCTATATTAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211294331|gb|FL267095.1|FL267095
EST:     CTTGCTGGTTTTGATCAAGTGGTCAKTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211290046|gb|FL267062.1|FL267062
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAWTG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGSTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211292183|gb|FL267075.1|FL267075
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211287913|gb|FL267057.1|FL267057
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211294335|gb|FL267099.1|FL267099
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211294328|gb|FL267092.1|FL267092
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211287904|gb|FL267048.1|FL267048
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211294325|gb|FL267089.1|FL267089
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211292186|gb|FL267078.1|FL267078
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211292189|gb|FL267081.1|FL267081
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211292182|gb|FL267074.1|FL267074
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211292185|gb|FL267077.1|FL267077
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211294338|gb|FL267102.1|FL267102
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211287909|gb|FL267053.1|FL267053
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|76015005|gb|DT942175.1|DT942175
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211290042|gb|FL267058.1|FL267058
EST:     CTTGCTGGCTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GAGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|31353952|gb|CD438309.1|CD438309
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211292194|gb|FL267086.1|FL267086
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211292190|gb|FL267082.1|FL267082
EST:     CTTGCTGGTTTTGATCAAGTGGTCATTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211290053|gb|FL267069.1|FL267069
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211292191|gb|FL267083.1|FL267083
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211290052|gb|FL267068.1|FL267068
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211294337|gb|FL267101.1|FL267101
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211294333|gb|FL267097.1|FL267097
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|193502120|gb|AM937931.1|AM937931
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211294334|gb|FL267098.1|FL267098
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211287905|gb|FL267049.1|FL267049
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211290048|gb|FL267064.1|FL267064
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211287908|gb|FL267052.1|FL267052
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211294327|gb|FL267091.1|FL267091
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211290045|gb|FL267061.1|FL267061
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|32932790|gb|CF037602.1|CF037602
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|32931205|gb|CF036017.1|CF036017
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211290054|gb|FL267070.1|FL267070
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGATCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211292188|gb|FL267080.1|FL267080
EST:     CTTGCKGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211287910|gb|FL267054.1|FL267054
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211292193|gb|FL267085.1|FL267085
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211292192|gb|FL267084.1|FL267084
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211294329|gb|FL267093.1|FL267093
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211294326|gb|FL267090.1|FL267090
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211290050|gb|FL267066.1|FL267066
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|14883495|gb|BI273378.1|BI273378
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
EST: gi|211290043|gb|FL267059.1|FL267059
EST:     CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATG                         GGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA
genomic: CTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 177

GTTTGGTCGAGACAGACCCAGAGGGTGCACTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAAATACAAAGAAATGATGGATGCATATAGAGAGATGTTAACATACATAAAA


Block sizes: 44 (upstream exon), 48 (downstream exon)
Score: 208

GTTTGGTCGAGACAGACCCAGAGGGTGCACTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAAATACAAAGAAATGATGGATGCATATAGAGAGATGTTAACATACATAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 235

GTTTGGTCGAGACAGACCCAGAGGGTGCACTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAAATACAAAGAAATGATGGATGCATATAGAGAGATGTTAACATACATAAAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 187

GTTTGGTCGAGACAGACCCAGAGGGTGCACTTGCTGGTTTTGATCAAGTGGTCAGTATGGAGCCTGAAAAGGCTGAATGgtaagtatcc ... atctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAAATACAAAGAAATGATGGATGCATATAGAGAGATGTTAACATACATAAAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttttttacctgtgcgcttctgatgctttactctctaattttatctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAAATACAAAGAAATGATGGATGCATATAGAGAGATGTTAACATACATAAAA
                                   ctctaat  putative branch site (score: 187)
                                         ttttatcttt  CT-rich tract
                                    tctaattttatcttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gagtcactttttctgaaatcaaatgtattatttattatttgatcatcatttttttacctgtgcgcttctgatgctttactctctaattttatctttatagGGGATTTAAAGCTCTTAAACAAACTGTCAAGCTTTACTATAAGCTGGGGAAATACAAAGAAATGATGGATGCATATAGAGAGATGTTAACATACATAAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - ttttctg
- - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcttt