1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatgatattgtccttgttctgtttctaatatttgtttcagtgtcatgatctctgatttctatttttcattgtttgacctttggttcttgatcttttttagTGCTTATATGGTGGTGCTCCTAAAGGTCCTCAGTTGAGAGATTTAGATAGAGGGGTTGATGTTGTTGTTGCAACACCTGGAAGGTTAAATGACATCTTGG
species | Zea mays |
transcript | GRMZM2G078826_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTC-AGAATTTCTTGC-CG TGCTTATATGG-GG-GCTCCTAAAGG-CCTCAGTTGAGAGATTTAGATAGAEST: gi|32944282|gb|CF049101.1|CF049101
genomic: CTTCAAGAATTTCTTGCACGgtttgttccc ... tcttttttagTGCTTATATGGTGGTGCTCCTAAAGGTCCTCAGTTGAGAGATTTAGATAGA
EST: TTCTGGATGAAGCTGTGAAATTTGGAAGATCTTCAAGAATTTCTTGCACG TGCTTATATGGTGGTGCTCCTAAAGGTCCTCAGTTGAGAGATTTAGATAGA
genomic: TTCTGGATGAAGCTGTGAAATTTGGAAGATCTTCAAGAATTTCTTGCACGgtttgttccc ... tcttttttagTGCTTATATGGTGGTGCTCCTAAAGGTCCTCAGTTGAGAGATTTAGATAGA
tgatctctgatttctatttttcattgtttgacctttggttcttgatcttttttagTGCTTATATGGTGGTGCTCCTAAAGGTCCTCAGTTGAGAGATTTAGATAGAGGGGTTGATGTTGTTGTTGCAACACCTGGAAGGTTAAATGACATCTTGG
tcttgat putative branch site (score: 138)
ttcttgatctttttt CT-rich tract
atttctatttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgatattgtccttgttctgtttctaatatttgtttcagtgtcatgatctctgatttctatttttcattgtttgacctttggttcttgatcttttttagTGCTTATATGGTGGTGCTCCTAAAGGTCCTCAGTTGAGAGATTTAGATAGAGGGGTTGATGTTGTTGTTGCAACACCTGGAAGGTTAAATGACATCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - -gtccttg
- - - - - - - - - -tgtttct
- - - - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - -catgatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcttg