1 5' 3' | 2 5' 3' | 3 5' 3' |
...aataattgtggtgcatgtatgcaaatacacgaatcttgactagtctagtaatgcatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagGAAGAGAAGAAGGAAGACAAGTTAGACAAAACAGAAGACGAGAAGAACTGCTTCAAGCTGGAGTGATGTCGCTGTGGTGCTTTTGTGACTGATCATCTCT
species | Zea mays |
transcript | GRMZM2G078663_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGATCCATCTATTAAAGATTTGCTGGCATCATTGCCCAGCCAGGGAGAG GAAGAGAAGAAGGAAGCCAAGTTAGACAAACCAGAAGACGAGAAGAACTGCEST: gi|166653551|gb|EG277332.1|EG277332
genomic: ATGATCCATCTATTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagGAAGAGAAGAAGGAAGACAAGTTAGACAAAACAGAAGACGAGAAGAACTGC
EST: TGATCCATCTATTAAAGATTTGCTGGCATCATTAGCACAGCCAGGGAGAG GAAGAGAAGAAGGAAGACAAGTTAGACAAAAC
genomic: TGATCCATCTATTAAAGATTTGCTGGCATCATT-GCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagGAAGAGAAGAAGGAAGACAAGTTAGACAAAAC
tagtaatgcatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagGAAGAGAAGAAGGAAGACAAGTTAGACAAAACAGAAGACGAGAAGAACTGCTTCAAGCTGGAGTGATGTCGCTGTGGTGCTTTTGTGACTGATCATCTCT
tttctttatttctctt CT-rich tract
tttctttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataattgtggtgcatgtatgcaaatacacgaatcttgactagtctagtaatgcatgtatgtggaaatatgaaggtttctttatttctcttcttaaacagGAAGAGAAGAAGGAAGACAAGTTAGACAAAACAGAAGACGAGAAGAACTGCTTCAAGCTGGAGTGATGTCGCTGTGGTGCTTTTGTGACTGATCATCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - -tgcatgt
- - - - - - - - - - - - - acacgaa