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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagctgaaactagtggcacatcatatatgataatttatttccagacattcttgggataaaatttgaagtgtatctccatgtggcctgtttcatctgcagGACAGCTCCATAGTGGCTTCAGTAGTGCAGAAATTGTTGCTCAATTTTGTAACACGACCGAAACTTCCTCTAAATGCTTCGCACCCTGTTTTCTCTGATG

Basic information

species Zea mays
transcript GRMZM2G078576_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078576_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g56630.1 (Oryza sativa), 3'ss of exon 4
gtaaaaagctga-aactagtggcacatcatatatgataatttatttccagaca-ttcttgggataaaatttgaagtgtatctccatgtggcctgtttcatctgcagGACAGCTCCATAGTGGCTTCAGTAGTGCAGAAATTGTTGCTCAATTTTGTAACACGACCGAAACTTCCTCTAAATGCTTCGCACCCTGTTTTCTCTGATG
    ||| |||| | ||  | |  ||| || | || |  | | ||| | |||  || ||  |   ||||||| | ||    ||| ||   | | ||   |||||||||||| ||||||||| | || ||||| || || ||| |||| |||||||||| ||||||     ||||| ||||   ||| ||||||| |||||||||||
--gtaaaactgatagctgcttgtgcattatgtttgctggtctttttgcggaccctttttatgtctaaatttggaatgcgcatccttgccacatattct-tctgcagGACAGTTCCATAGTGTCCTCGGTAGTTCAAAAGTTGCTGCTAAATTTTGTAAAACGACCACGGATTCCTTTAAACAGTTCACACCCTGCTTTCTCTGATG

upper sequence: GRMZM2G078576_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g56630.2 (Oryza sativa), 3'ss of exon 4
gtaaaaagctga-aactagtggcacatcatatatgataatttatttccagaca-ttcttgggataaaatttgaagtgtatctccatgtggcctgtttcatctgcagGACAGCTCCATAGTGGCTTCAGTAGTGCAGAAATTGTTGCTCAATTTTGTAACACGACCGAAACTTCCTCTAAATGCTTCGCACCCTGTTTTCTCTGATG-----
    ||| |||| | ||  | |  ||| || | || |  | | ||| | |||  || ||  |   ||||||| | ||    ||| ||   | | ||   |||||||||||| ||||||||| | || ||||| || || ||| |||| |||||||||| ||||||     ||||| ||||   ||| ||||||| |||||||||||     
--gtaaaactgatagctgcttgtgcattatgtttgctggtctttttgcggaccctttttatgtctaaatttggaatgcgcatccttgccacatattct-tctgcaggacagTTCCATAGTGTCCTCGGTAGTTCAAAAGTTGCTGCTAAATTTTGTAAAACGACCACGGATTCCTTTAAACAGTTCACACCCTGCTTTCTCTGATGATGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19855088|gb|BQ060140.1|BQ060140
EST:     CTCCAGAACCAAAGGATGTGCATCCTT-CATTGATGCAGCTATGCT-CAG                         GACAGC-CCGTAGTG
genomic: CTCCAGAACCAAAGGATGTGCATCCTTTCATTGATGCAGCTATGCTTCAGgtaaaaagct ... tcatctgcagGACAGCTCCATAGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattcttgggataaaatttgaagtgtatctccatgtggcctgtttcatctgcagGACAGCTCCATAGTGGCTTCAGTAGTGCAGAAATTGTTGCTCAATTTTGTAACACGACCGAAACTTCCTCTAAATGCTTCGCACCCTGTTTTCTCTGATG
                                       cctgtttc  CT-rich tract
           ataaaatttgaagt  TA-rich tract