Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaaacgcctgccctgagatcgatttgatcctctatttctaacccgatttccaaatcgatctctgctctcaaaacttaacatgtgctcttcccccttgatttttatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG

Basic information

species Zea mays
transcript GRMZM2G077607_T06
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077607_T06 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g48830.2 (Oryza sativa), 3'ss of exon 3
gtat-taaacgcctgccctg-agatcgatttgatcctctatttctaacccgatttccaaatcgatctctgctctcaaaacttaacatgtg-ctcttcccccttgatttttatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG
||||   ||    ||| | | | | ||   ||||| | | |        | |||     |||  | |||| || || | || |||||||| ||| |    |      | |    |||||| ||| ||||| || |||||| | || || |||||||| |||||||| |||||||| ||||||||||| |||||||||
gtatgccaatctttgctccgcaaaccggcctgatcttatctgctccgatccattcttgcatctgt-tctgatcacagagct-aacatgtgtctcgtgttgcccccgatgtgatgtgcagTATGTATTCCCTGGGATGTGGCTTTCAGACTTGACGAGAGGACGGTATGAGGTGCGAGAGAAGAAATGTGTGAAGAAG

upper sequence: GRMZM2G077607_T06 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g48830.1 (Oryza sativa), 3'ss of exon 3
gtat-taaacgcctgccctg-agatcgatttgatcctctatttctaacccgatttccaaatcgatctctgctctcaaaacttaacatgtg-ctcttcccccttgatttttatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG----------------------
||||   ||    ||| | | | | ||   ||||| | | |        | |||     |||  | |||| || || | || |||||||| ||| |    |      | |    |||||| ||| ||||| || |||||| | || || |||||||| |||||||| |||||||| ||||||||||| |||||||||                      
gtatgccaatctttgctccgcaaaccggcctgatcttatctgctccgatccattcttgcatctgt-tctgatcacagagct-aacatgtgtctcgtgttgcccccgatgtgatgtgcagTATGTATTCCCTGGGATGTGGCTTTCAGACTTGACGAGAGGACGGTATGAGGTGCGAGAGAAGAAATGTGTGAAGAAGGTATACTCCACTCTGCACCTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148945559|gb|EC890812.2|EC890812
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148961303|gb|EE012028.2|EE012028
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|110522399|gb|EE026583.1|EE026583
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|101395953|gb|EB819903.1|EB819903
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|50337368|gb|CO532494.1|CO532494
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149102953|gb|EE288307.2|EE288307
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149001201|gb|EE038471.2|EE038471
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|50331099|gb|CO526225.1|CO526225
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|38687645|gb|CK144676.1|CK144676
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149103379|gb|EE288765.2|EE288765
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149110620|gb|EE294219.2|EE294219
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149106408|gb|EE292135.2|EE292135
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149021603|gb|EE154455.2|EE154455
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148956370|gb|EC902184.2|EC902184
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|101402571|gb|EB822834.1|EB822834
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|71756828|gb|DR954765.1|DR954765
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148963706|gb|EE014774.2|EE014774
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|76908493|gb|DV162968.1|DV162968
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|71764405|gb|DR962342.1|DR962342
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|88753314|gb|DY537455.1|DY537455
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148986662|gb|EE030442.2|EE030442
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148933726|gb|EC877642.2|EC877642
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148961771|gb|EE012548.2|EE012548
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|86474504|gb|DY240874.1|DY240874
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148995104|gb|EE034396.2|EE034396
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|71317318|gb|DR795348.1|DR795348
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148951901|gb|EC897677.2|EC897677
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148958433|gb|EC904667.2|EC904667
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|71766162|gb|DR964099.1|DR964099
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149078211|gb|EE166966.2|EE166966
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|94475460|gb|EB704418.1|EB704418
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|71760606|gb|DR958543.1|DR958543
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|78110504|gb|DV528914.1|DV528914
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149084716|gb|EE174208.2|EE174208
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGGGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGTCGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148953834|gb|EC899210.2|EC899210
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|91055118|gb|EB165536.1|EB165536
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|91874845|gb|EB404802.1|EB404802
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149058026|gb|EE156710.2|EE156710
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148939787|gb|EC884487.2|EC884487
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|71775438|gb|DR973316.1|DR973316
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148933575|gb|EC877445.2|EC877445
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|101385251|gb|EB814671.1|EB814671
EST:     ACAAGACCCTCC-A                         TTTGGTCTTCCGGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTTACG
genomic: ACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTT-GTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGG-TACG
EST: gi|148987354|gb|EE031196.2|EE031196
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|71440678|gb|DR821728.1|DR821728
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149101066|gb|EE187165.2|EE187165
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|14244188|gb|BG842258.2|BG842258
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|76914201|gb|DV165443.1|DV165443
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149080427|gb|EE169450.2|EE169450
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|71433799|gb|DR814849.1|DR814849
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149073840|gb|EE162161.2|EE162161
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|93283758|gb|EB676022.1|EB676022
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|101385894|gb|EB814995.1|EB814995
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|149104291|gb|EE289730.2|EE289730
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148928285|gb|EE284886.2|EE284886
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|71434244|gb|DR815294.1|DR815294
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148963705|gb|EE014773.2|EE014773
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|76281284|gb|DV020852.1|DV020852
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|76282270|gb|DV021838.1|DV021838
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|91878131|gb|EB408088.1|EB408088
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|148997313|gb|EE035808.2|EE035808
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|78080307|gb|DV508719.1|DV508719
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|78079039|gb|DV507451.1|DV507451
EST:     TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
EST: gi|94477672|gb|EB706630.1|EB706630
EST:     TGCCCCAGCGGCTCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAA                         TTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG
genomic: TGCCCCAGCGGCCCAAGAAAAGGGCTAAGAACGTGGACAAGACCCTCCAAgtattaaacg ... tatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctgctctcaaaacttaacatgtgctcttcccccttgatttttatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG
                           ctcttcccccttgatt  CT-rich tract
                                     ttgatttttatcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattaaacgcctgccctgagatcgatttgatcctctatttctaacccgatttccaaatcgatctctgctctcaaaacttaacatgtgctcttcccccttgatttttatcatgcagTTTGTCTTCCCGGGTATGTGGTTGTCCGATTTGACGAGGGGACGGTACGAGGTGCGGGAGAAGAAATGCGTGAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG