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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacaataatctgttgcatctgttcagttttcactattcttttggcgagtctgagagaaatgtcggttaaacactaccctgttatttcgaactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCAGTGAGGACAATGTGTTGGTTGGCAACCTTGTTGTGCAAAATCAG

Basic information

species Zea mays
transcript GRMZM2G077233_T04
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8367213|gb|BE050158.1|BE050158
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211429217|gb|FL412881.1|FL412881
EST:     TTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGGCAA-TCGCTGGCTTCTT
genomic: TTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAA-TGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGG-CAAATCGCTGGCTTCTT
EST: gi|211068177|gb|FL270390.1|FL270390
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGG
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGG
EST: gi|211065425|gb|FL270389.1|FL270389
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGT-CTGGGCAAATCGCTGGC
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGC
EST: gi|211092306|gb|FL381164.1|FL381164
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGAT
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGAT
EST: gi|211260811|gb|FL015518.1|FL015518
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATTATGGTTCTGGGCAAATCGCTGGCTTCTT
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACAT-ATGGTTCTGGGCAAATCGCTGGCTTCTT
EST: gi|67034446|gb|CO462996.1|CO462996
EST:     CTTACACCATAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211099804|gb|FL386854.1|FL386854
EST:     CTTACACCACAGATACNAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GGAGA-TCTTGTACGATAACATATGGTTCTGGGCAAATC
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagG-AGAATCTTGTACGATAACATATGGTTCTGGGCAAATC
EST: gi|211307069|gb|FL384798.1|FL384798
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211541914|gb|FL379334.1|FL379334
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|91876413|gb|EB406370.1|EB406370
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|60357617|gb|DN224590.1|DN224590
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211526836|gb|FL377024.1|FL377024
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATG
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATG
EST: gi|211263239|gb|FL015521.1|FL015521
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|76291015|gb|DV030583.1|DV030583
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211068182|gb|FL270395.1|FL270395
EST:     TTACACCACAGATACGAGTCAACCAAGTCGAA-ACCTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: TTACACCACAGATACAAGTCAACCAAGTCGAAGAC-TTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211065421|gb|FL270385.1|FL270385
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACTTATGGTTCTGGGCAAATCGCTGGCTTC
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTC
EST: gi|211256572|gb|FL391902.1|FL391902
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211068181|gb|FL270394.1|FL270394
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211206833|gb|FL384246.1|FL384246
EST:     TTACACCACAGATACAAGTCAACCAAGTCGAAGM-TTNACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTTC
genomic: TTACACCACAGATACAAGTCAACCAAGTCGAAGACTT-ACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTT-C
EST: gi|32851441|gb|CD991122.1|CD991122
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211260809|gb|FL015516.1|FL015516
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTC
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTC
EST: gi|211504863|gb|FL422036.1|FL422036
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211384115|gb|FL248478.1|FL248478
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGN-TTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|32848977|gb|CD988658.1|CD988658
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACAT
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACAT
EST: gi|76289740|gb|DV029308.1|DV029308
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211373714|gb|FL377783.1|FL377783
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211260810|gb|FL015517.1|FL015517
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTT
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTT
EST: gi|211276938|gb|FL386932.1|FL386932
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCT
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCT
EST: gi|211488507|gb|FL422898.1|FL422898
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGMYTCACACAAAGAATG                         GAGAATCTTGTACGATAACATATGG
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGG
EST: gi|101393193|gb|EB818527.1|EB818527
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|78179156|gb|DV549529.1|DV549529
EST:     CTTACACCATAAATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211501660|gb|FL380192.1|FL380192
EST:     CTTACACCACAGATACNAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGGTCTGGGCAAATCGCTGGCTTCTTC-
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
EST: gi|211448105|gb|FL406311.1|FL406311
EST:     CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATG                         GAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA
genomic: CTTACACCACAGATACAAGTCAACCAAGTCGAAGACTTACACAAAGAATGgtacacaata ... aactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgagtctgagagaaatgtcggttaaacactaccctgttatttcgaactgtacagGAGAATCTTGTACGATAACATATGGTTCTGGGCAAATCGCTGGCTTCTTCAGTGAGGACAATGTGTTGGTTGGCAACCTTGTTGTGCAAAATCAG
                                   tgttattt  TA-rich tract