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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgtgccgtctcatttgcatgatgtaaactatggaatggagttagttagatagataatctttatggaacaccttgcctaataatttgtcctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG

Basic information

species Zea mays
transcript GRMZM2G077222_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211155347|gb|FL193257.1|FL193257
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211505017|gb|FL316062.1|FL316062
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211265615|gb|FL356056.1|FL356056
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211001384|gb|FL323102.1|FL323102
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCANGCTGGTGAATTGNGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211308384|gb|FL348182.1|FL348182
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211155354|gb|FL193264.1|FL193264
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211464944|gb|FL327919.1|FL327919
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211143697|gb|FL324988.1|FL324988
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211287060|gb|FL337502.1|FL337502
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|160481399|gb|EY254523.1|EY254523
EST:     CTGTTGACCCAACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: CTGTTGACCCAACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211155352|gb|FL193262.1|FL193262
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211155344|gb|FL193254.1|FL193254
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211388119|gb|FL310430.1|FL310430
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211541249|gb|FL353983.1|FL353983
EST:     AACCCAGGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCA-GGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|31357653|gb|CD442010.1|CD442010
EST:     CTGTTGACCCAACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: CTGTTGACCCAACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211012723|gb|FL335935.1|FL335935
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211183895|gb|FL345854.1|FL345854
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211163533|gb|FL327752.1|FL327752
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211072387|gb|FL092508.1|FL092508
EST:     CTGTTGACCCAACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: CTGTTGACCCAACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211465954|gb|FL364649.1|FL364649
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211239604|gb|FL338007.1|FL338007
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211153739|gb|FL193240.1|FL193240
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211478133|gb|FL352004.1|FL352004
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211130568|gb|FL330782.1|FL330782
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211320240|gb|FL338455.1|FL338455
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211093607|gb|FL328988.1|FL328988
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211155342|gb|FL193252.1|FL193252
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211356808|gb|FL332694.1|FL332694
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|31358997|gb|CD443354.1|CD443354
EST:     CTGTTGACCCCACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: CTGTTGACCCAACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211155346|gb|FL193256.1|FL193256
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211158735|gb|FL327705.1|FL327705
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211356810|gb|FL332696.1|FL332696
EST:     GAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGNGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: GAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211133468|gb|FL349783.1|FL349783
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211480395|gb|FL326614.1|FL326614
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211432079|gb|FL309133.1|FL309133
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211509614|gb|FL308773.1|FL308773
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211534207|gb|FL317060.1|FL317060
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211297774|gb|FL337584.1|FL337584
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211096961|gb|FL367333.1|FL367333
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211025945|gb|FL329790.1|FL329790
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211285077|gb|FL334450.1|FL334450
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211243597|gb|FL313136.1|FL313136
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211155351|gb|FL193261.1|FL193261
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211453287|gb|FL343581.1|FL343581
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211455408|gb|FL343588.1|FL343588
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
EST: gi|211153750|gb|FL193251.1|FL193251
EST:     AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAG                         GTGATCGAACCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT
genomic: AACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 115

AGTATCCACTGCTTTACAGGTGCCCGCAGGGCCGATTGTGGTTCCAGCTTCTGTTGACCCAACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 347

AGTATCCACTGCTTTACAGGTGCCCGCAGGGCCGATTGTGGTTCCAGCTTCTGTTGACCCAACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 119

AGTATCCACTGCTTTACAGGTGCCCGCAGGGCCGATTGTGGTTCCAGCTTCTGTTGACCCAACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 176

AGTATCCACTGCTTTACAGGTGCCCGCAGGGCCGATTGTGGTTCCAGCTTCTGTTGACCCAACCCAGGAAAATGCTATAGCTGCATTGCAGATTCTAAAGgtatctctcg ... ctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagatagataatctttatggaacaccttgcctaataatttgtcctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG
                              gcctaat  putative branch site (score: 176)
                                       tttgtcctctttt  putative PPT
     atagataatctttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttgtgccgtctcatttgcatgatgtaaactatggaatggagttagttagatagataatctttatggaacaccttgcctaataatttgtcctcttttaagGTGATCGAATCCAGTGCTCAAGCTGGTGAATTGTGTACCCGGCGTGAGTATGCTCGATGGTTGGTAGCTGCGAGCAATTGCCTTTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC