1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aatgtaactgtgtccccaatcagtctttgacagttaatttgtgtaaaaacatactgttgcctgaccctgtattcattttttggggggtttgtggttgcagGATATAGTCATAGGAACTCCTGGTCGTATGAAAGACCTTATTGAAATGGGTGTTTGCTGTCTTAATGAGGTTTCGTTTGTG
species | Zea mays |
transcript | GRMZM2G076484_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGAACTAAAAAGGAACCCACAA-TATCTGCCCTTAAATCTGGAGTG GATATAGTCATAEST: gi|74244222|gb|DT652136.1|DT652136
genomic: TGGTGGAACTAAAAAGGAACCC-CAAATATCTGCCCTTAAATCTGGAGTGgtaagataac ... gtggttgcagGATATAGTCATA
EST: TGGTGGAACTAAAAAGGAACCCCAAATATCTGCCCCTTAA-TCTGGAGTG GATATAGTCATAGGAACTCCTGGTCGTATGAAAGACCTTATTGAAATGGGTEST: gi|71428435|gb|DR809485.1|DR809485
genomic: TGGTGGAACTAAAAAGGAACCCCAAATATCTGCCC-TTAAATCTGGAGTGgtaagataac ... gtggttgcagGATATAGTCATAGGAACTCCTGGTCGTATGAAAGACCTTATTGAAATGGGT
EST: ATGGTGGAACTAAAAAGGAACCCCAAATATCTGCCCTTAAATCTGGAGTG GATATAGTCATAGGAACTCCTGGTCGTATGAAAGACCTTATTGAAATGGGTEST: gi|149059470|gb|EE156955.2|EE156955
genomic: ATGGTGGAACTAAAAAGGAACCCCAAATATCTGCCCTTAAATCTGGAGTGgtaagataac ... gtggttgcagGATATAGTCATAGGAACTCCTGGTCGTATGAAAGACCTTATTGAAATGGGT
EST: ATGGTGGAACTAAAAAGGAACCCCAAATATCTGCCCTTAAATCTGGAGTG GATATAGTCATAGGAACTCCTGGTCGTATGAAAGACCTTATTGAAATGGGT
genomic: ATGGTGGAACTAAAAAGGAACCCCAAATATCTGCCCTTAAATCTGGAGTGgtaagataac ... gtggttgcagGATATAGTCATAGGAACTCCTGGTCGTATGAAAGACCTTATTGAAATGGGT
aaaacatactgttgcctgaccctgtattcattttttggggggtttgtggttgcagGATATAGTCATAGGAACTCCTGGTCGTATGAAAGACCTTATTGAAATGGGTGTTTGCTGTCTTAATGAGGTTTCGTTTGTG
gcctgac putative branch site (score: 66)
tgtattcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtaactgtgtccccaatcagtctttgacagttaatttgtgtaaaaacatactgttgcctgaccctgtattcattttttggggggtttgtggttgcagGATATAGTCATAGGAACTCCTGGTCGTATGAAAGACCTTATTGAAATGGGTGTTTGCTGTCTTAATGAGGTTTCGTTTGTG
- - - - - - - -ccaatca
- - - - - - - - - - - - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctgta