1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgtactgtagataaatgatatcccaaatgcactcaacagtaggaatcaaagcggatcactaatgctgaaatctaatcctgtctgtattgtgttactcagGAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCCGACAACTTCATGTGCACCCTCCTCCCCGGCATCTCCAATCACCCCCAGA
species | Zea mays |
transcript | GRMZM2G076049_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCAAAG GAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCCEST: gi|149103501|gb|EE288895.2|EE288895
genomic: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCAAAGgtccatccat ... tgttactcagGAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCC
EST: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCAAAG GAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCCEST: gi|71446436|gb|DR827486.1|DR827486
genomic: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCAAAGgtccatccat ... tgttactcagGAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCC
EST: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCAAAG GAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCC
genomic: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCAAAGgtccatccat ... tgttactcagGAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCC
atcaaagcggatcactaatgctgaaatctaatcctgtctgtattgtgttactcagGAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCCGACAACTTCATGTGCACCCTCCTCCCCGGCATCTCCAATCACCCCCAGA
aaatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtactgtagataaatgatatcccaaatgcactcaacagtaggaatcaaagcggatcactaatgctgaaatctaatcctgtctgtattgtgttactcagGAGGTTCTGATGGGGAAGGACGAGTACTTCCAGTCCTTCCGTGTCAACGCCGACAACTTCATGTGCACCCTCCTCCCCGGCATCTCCAATCACCCCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
-tgtactg
- - - - - - - - - - - - - aatgcac
- - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa