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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctaaaatggtaatccatgctgcattaatccttctttcacttccatcattttgattactaacattatcactgacctgtgtatcaatccacaccgcagatttagacttataggtgcctaacatttcttcacttgttttcagGCAGCCTGCGAAGATCTCAGAGGCAGCAGGTTGTTCCTGAAACTACTCGAGGCGGTGCTGAGAACCGGGAACCGGATGAATGTCGGCACAAACCGGGGTG

Basic information

species Zea mays
transcript GRMZM2G075921_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G075921_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g10680.1 (Oryza sativa), 3'ss of exon 3
gtacgctaaaatggtaatccatgctgcattaatccttctttcacttccatcattttgattactaacattatcactgacctgtgtatcaatccacaccgcagatttagacttataggtgcctaacatttcttcacttgttttcagGCAGCCTGCGAAGATCTCAGAGGCAGCAGGTTGTTCCTGAAACTACTCGAGGCGGTGCTGAGAACCGGGAACCGGATGAATGTCGGCACAAACCGGGGTG
                        |    |||  |||  ||   || |  ||| |||| ||  | ||  ||     ||     ||| || ||  ||       | | | ||       | |  ||| | || ||||   || |||| || || |||||||| |||||||| ||||||||||| ||||| || || || |||||||||||||| |||||||||||||| || |||||  ||||||
-----------------------gtatgctaagtctt--ttagttttc--catgttgaatatcatcaccattttcaac-----tattaaacc-tacaattagctgacattt-------cttgtcatgtttttactt---tttagGCTGCTTGTGAAGATCTTAGAGGCAGTAGGTTGTTCCTAAAACTCCTTGAAGCAGTGCTGAGAACCGGAAACCGGATGAATGTTGGGACAAATAGGGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166537369|gb|EG257636.1|EG257636
EST:     TTTTGAGACATTAGAG                         GCAGCCTGCGAAGATCTCAGAGGCAGCAGGTTGTTCCTGAAACTACTCGAG
genomic: TTTTGAGACATTAGAGgtacgctaaa ... ttgttttcagGCAGCCTGCGAAGATCTCAGAGGCAGCAGGTTGTTCCTGAAACTACTCGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccacaccgcagatttagacttataggtgcctaacatttcttcacttgttttcagGCAGCCTGCGAAGATCTCAGAGGCAGCAGGTTGTTCCTGAAACTACTCGAGGCGGTGCTGAGAACCGGGAACCGGATGAATGTCGGCACAAACCGGGGTG
                            gcctaac  putative branch site (score: 2)
                                    tttcttcacttgtttt  CT-rich tract
                               taacattt  TA-rich tract