1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agcatcaaccattaaagagtcttcagcattttgtgcgctttttatttggtggtttcttttccctgcttggtgcaaatcatgacaatccaggtcatagcagAGCGTGAGCACAAAATCCGCAGTGAAGTCAAGGAGATACAGAAGGTGTTCTTTTGCAACCTCTGCAATAAGCAGTACAAGCTGGCTCATGAATTTGAGAG
species | Zea mays |
transcript | GRMZM2G075551_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|71433465|gb|DR814515.1|DR814515
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|71433465|gb|DR814515.1|DR814515
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|71433465|gb|DR814515.1|DR814515
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|74234698|gb|DT642612.1|DT642612
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG AGCGTGAGCACAAAATCCGCAGTGAAGTCAAGGAGATACAGAAGGTGTTGTEST: gi|74244524|gb|DT652438.1|DT652438
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcagAGCGTGAGCACAAAATCCGCAGTGAAGTCAAGGAGATACAGAAGGTGTTCT
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|74244524|gb|DT652438.1|DT652438
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|74244524|gb|DT652438.1|DT652438
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|74244524|gb|DT652438.1|DT652438
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|76932418|gb|DV173042.1|DV173042
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|76932418|gb|DV173042.1|DV173042
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|76932418|gb|DV173042.1|DV173042
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|76932418|gb|DV173042.1|DV173042
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|89761563|gb|DY689524.1|DY689524
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|89761563|gb|DY689524.1|DY689524
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|89761563|gb|DY689524.1|DY689524
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|89761563|gb|DY689524.1|DY689524
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|71422270|gb|DR805672.1|DR805672
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG AGCGTGAGCACAAAATCCGCAGTGAAGTCAAGGAGATACAGAAGGTGTTCTEST: gi|71324316|gb|DR798859.1|DR798859
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcagAGCGTGAGCACAAAATCCGCAGTGAAGTCAAGGAGATACAGAAGGTGTTCT
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG AGCGTGAGCACAAAATCCGCAGTGAAGTCAAGGAGATACAGAAGGTGTTCTEST: gi|76283408|gb|DV022976.1|DV022976
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcagAGCGTGAGCACAAAATCCGCAGTGAAGTCAAGGAGATACAGAAGGTGTTCT
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|76283408|gb|DV022976.1|DV022976
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|76283408|gb|DV022976.1|DV022976
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|76283408|gb|DV022976.1|DV022976
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|93281364|gb|EB673628.1|EB673628
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG AGCGTGAGCACAAAATCCGCAGTGAAGTCAAGGAGATACAGAAGGTGTTCTEST: gi|76290174|gb|DV029742.1|DV029742
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcagAGCGTGAGCACAAAATCCGCAGTGAAGTCAAGGAGATACAGAAGGTGTTCT
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|76290174|gb|DV029742.1|DV029742
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|76290174|gb|DV029742.1|DV029742
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG GEST: gi|76290174|gb|DV029742.1|DV029742
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
EST: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAG G
genomic: AATTGAATATTGAACTTGAGGAGACTGAGGAACATATAAAGAAACGGGAGgtatgcaatc ... gtcatagcag-
ttggtggtttcttttccctgcttggtgcaaatcatgacaatccaggtcatagcagAGCGTGAGCACAAAATCCGCAGTGAAGTCAAGGAGATACAGAAGGTGTTCTTTTGCAACCTCTGCAATAAGCAGTACAAGCTGGCTCATGAATTTGAGAG
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcatcaaccattaaagagtcttcagcattttgtgcgctttttatttggtggtttcttttccctgcttggtgcaaatcatgacaatccaggtcatagcagAGCGTGAGCACAAAATCCGCAGTGAAGTCAAGGAGATACAGAAGGTGTTCTTTTGCAACCTCTGCAATAAGCAGTACAAGCTGGCTCATGAATTTGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG