1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgatgttcggtagtggaaatgtcgacacattgtaggttgcatttggttggaggctaaacagttgcatattctcatggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCAGCTGTGGCTATGCTCAGCGCACTTGTCCCTGCTGGTGGGCACATTGTG
species | Zea mays |
transcript | GRMZM2G075153_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|30705385|gb|CD058765.1|CD058765
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|149094739|gb|EE180295.2|EE180295
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|71419168|gb|DR804676.1|DR804676
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|30705650|gb|CD058859.1|CD058859
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|78111688|gb|DV530085.1|DV530085
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|76291942|gb|DV031510.1|DV031510
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|148948278|gb|EC893795.2|EC893795
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|149074757|gb|EE163186.2|EE163186
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|74245810|gb|DT653724.1|DT653724
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|29946125|gb|CB815991.1|CB815991
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|76933173|gb|DV173352.1|DV173352
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|149108488|gb|EE189677.2|EE189677
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|211066604|gb|FL423906.1|FL423906
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|38229609|gb|CF919922.1|CF919922
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCEST: gi|91873684|gb|EB403641.1|EB403641
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
EST: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAG CGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
genomic: TATGGGAGGTATGGGAACCCGACCACGGAGGCATTAGAGAAGAAGATGAGgtgatgttcg ... catggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGC
cattgtaggttgcatttggttggaggctaaacagttgcatattctcatggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCAGCTGTGGCTATGCTCAGCGCACTTGTCCCTGCTGGTGGGCACATTGTG
ggctaaa putative branch site (score: 3)
tattctc putative PPT
atattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgttcggtagtggaaatgtcgacacattgtaggttgcatttggttggaggctaaacagttgcatattctcatggtgcagCGCACTGGAGAAAGCAGAGTCCACCGTGTTTGTGGCGTCAGGGATGTATGCAGCTGTGGCTATGCTCAGCGCACTTGTCCCTGCTGGTGGGCACATTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG