1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgccaaatgaaatctgtttacaaagaaaaagtattgtgataatttgcatatgaggagggtacctaacataaagtactgagaacaatttgtaccgttgtagTGTTGATAAGCAATTGGAGAAGGATGTGCAACTAGTAGATTCAATTGCTGAGAAACAAGCCCAAATTTTTTCAGAGGAGTGCAAGCTTTTCCCTGCGGAT
species | Zea mays |
transcript | GRMZM2G075101_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGACCTAGTGGAAGCTAGTTGCTACGCTGACAATCCAGAATGGGAG TGTTGATAAGCAATTGGAGAAGGATGTGCAACTAGTAGATTCAATTGCTGEST: gi|74246322|gb|DT654236.1|DT654236
genomic: TTGTTGACCTAGTGGAAGCTAGTTGCTACGCTGACAATCCAGAATGG-AGgtcgggttta ... accgttgtagTGTTGATAAGCAATTGGAGAAGGATGTGCAACTAGTAGATTCAATTGCTG
EST: ATTGTTGACCTAGTGGAAGCTAGTTGCTACGCTGACAATCCAGAATGGAG TGTTGATAAGCAATTGGAGAAGGATGTGCAACTAGTAGATTCAATTGCTGAEST: gi|88746013|gb|DY530154.1|DY530154
genomic: ATTGTTGACCTAGTGGAAGCTAGTTGCTACGCTGACAATCCAGAATGGAGgtcgggttta ... accgttgtagTGTTGATAAGCAATTGGAGAAGGATGTGCAACTAGTAGATTCAATTGCTGA
EST: ATTGTTGACCTAGTGGAAGCTAGTTGCTACGCTGACAATCCAGAATGGAG TGTTGATAAGCAATTGGAGAAGGATGTGCATCTAGTAGATTCAATTGCTGA
genomic: ATTGTTGACCTAGTGGAAGCTAGTTGCTACGCTGACAATCCAGAATGGAGgtcgggttta ... accgttgtagTGTTGATAAGCAATTGGAGAAGGATGTGCAACTAGTAGATTCAATTGCTGA
gcatatgaggagggtacctaacataaagtactgagaacaatttgtaccgttgtagTGTTGATAAGCAATTGGAGAAGGATGTGCAACTAGTAGATTCAATTGCTGAGAAACAAGCCCAAATTTTTTCAGAGGAGTGCAAGCTTTTCCCTGCGGAT
acctaac putative branch site (score: 2)
taacataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccaaatgaaatctgtttacaaagaaaaagtattgtgataatttgcatatgaggagggtacctaacataaagtactgagaacaatttgtaccgttgtagTGTTGATAAGCAATTGGAGAAGGATGTGCAACTAGTAGATTCAATTGCTGAGAAACAAGCCCAAATTTTTTCAGAGGAGTGCAAGCTTTTCCCTGCGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - aaatgaaa
- - - - - - tctgttt
- - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - tttgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaat