1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catcatgataacatctaatggaatttcaatccgacccttcttcttgttcttttcgtacttggattatttaaggtctaatgactttatatttcactcctagTATATGATGTCACAAAGAGAGAAAGTTTCTCAAATTTGGCTGATGTTTGGACTAAGGAAATAGAAGCAAACTCAACAAACAAAGACTGCATAAAAATGCT
species | Zea mays |
transcript | GRMZM2G075051_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTCTAG TATATGATGTCACAAAGAGAGAAAGTTTCTCAAATTTGGCTGATGTTTGGAEST: gi|101387421|gb|EB815726.1|EB815726
genomic: TAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTCTAGgtaagacaat ... tcactcctagTATATGATGTCACAAAGAGAGAAAGTTTCTCAAATTTGGCTGATGTTTGGA
EST: TCAGGGAATTATTTTAG TATATGATGTCACAAAGAGAGAAAGTTTTTCAAATTTGGTTGATGTTTGGAEST: gi|47962623|gb|CN845332.1|CN845332
genomic: TCAGGGAATTATTCTAGgtaagacaat ... tcactcctagTATATGATGTCACAAAGAGAGAAAGTTTCTCAAATTTGGCTGATGTTTGGA
EST: TAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTCTAG TATATGATGTCACAAAGAGAGAAAGTTTCTCAAATTTGGCTGATGTTTGGAEST: gi|78106734|gb|DV525152.1|DV525152
genomic: TAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTCTAGgtaagacaat ... tcactcctagTATATGATGTCACAAAGAGAGAAAGTTTCTCAAATTTGGCTGATGTTTGGA
EST: TAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTCTAG TATATGATGTCACAAAGAGAGAAAGTTTCTCAAATTTGGCTGATGTTTGGA
genomic: TAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTCTAGgtaagacaat ... tcactcctagTATATGATGTCACAAAGAGAGAAAGTTTCTCAAATTTGGCTGATGTTTGGA
gttcttttcgtacttggattatttaaggtctaatgactttatatttcactcctagTATATGATGTCACAAAGAGAGAAAGTTTCTCAAATTTGGCTGATGTTTGGACTAAGGAAATAGAAGCAAACTCAACAAACAAAGACTGCATAAAAATGCT
gtctaat putative branch site (score: 93)
tttcactcct putative PPT
taatgactttatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcatgataacatctaatggaatttcaatccgacccttcttcttgttcttttcgtacttggattatttaaggtctaatgactttatatttcactcctagTATATGATGTCACAAAGAGAGAAAGTTTCTCAAATTTGGCTGATGTTTGGACTAAGGAAATAGAAGCAAACTCAACAAACAAAGACTGCATAAAAATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA