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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacttgctgttacattttttgtaataggtttgtaagctttatatagcatgatcttatggcaaggaaatacatctgtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA

Basic information

species Zea mays
transcript GRMZM2G074898_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074898_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 3
gttac-ttgctgttacattttttgtaataggtttgtaagctttatatagc-atgatcttatggcaaggaaatacatctgtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA
|| |   || |  |  | |  |||   ||   |    |  ||| | |    |  |  || | | ||    ||   | | || |   |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
gtcaggctgttcatcgaatgattgctttaatgtcaggatatttctctgcttagaaggttgttgtaaacgtattggtatattgt-acagGTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGA

upper sequence: GRMZM2G074898_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA03G34700.1 (Glycine max), 3'ss of exon 2
-------------------------------------------------------------gtt--acttgctgtta------cattttttgtaataggtttgtaagctttata-tagc-atgatcttatggcaaggaaatacatctgtt---tttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA
                                                             |||  | ||||| | |      |||||||  | || || || |    ||  || |||  |||||  |      |||   |   | ||||   | | ||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||  ||||||| |||||||| || |||||||| ||||| ||||| |
gtgacataaaatatgtctcattgaattttgggtggatgtatctcatcatttcagtctggatgttcaatttgctatgatttgatcatttttaattatggggttttttctttgttactagttatgatactgatatgagggtttttgtttgttgaatctatagGTTTTCCTGTTTGCCAACTCAAAATGTAAGCGGTATTTCCACAACCGCCTGAAGCCCTCAAAGCTCACCTGGACTGCTATGTACAGAAAGCAACACAAAA

upper sequence: GRMZM2G074898_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA19G37370.2 (Glycine max), 3'ss of exon 2
---------------------------------------------------------gttact-tgctgtta-catttttt-gtaatagg-----tttgtaagct-tta--tatagcat-gatcttatggcaaggaaatacatctgtt---tttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA
                                                          || |  || ||| | |||||||| || ||  |     |||||  | |  ||  |||   || |||  |      ||||  |   | ||||   | |  |||||||||| ||||| ||||| ||||| ||| | || |||||||| |||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| |
gtaacataaaatatgttttgggttgatgtgtcgcattatttcagtctggttgttctgtttgcaatgatgtgatcattttttagttatgagggttttttgtttgttgctagttatgatattgatactgatatgaggatttttgtttgttgaatctacagGTTTTCCTGTTTGCAAACTCAAAATGTAAGAGGTATTTCCACAATCGCCTGAAGCCTTCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAAA

upper sequence: GRMZM2G074898_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA10G07680.1 (Glycine max), 3'ss of exon 2
---------------------------------------------------------------gttacttgctgttacattttttgtaataggtttgtaagctttatatagcatgatcttatggca-aggaaatacatctgtt---tttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA
                                                                 |   | || | |||   |    |  |  ||||   | ||| ||     |  | |  ||  | |||  ||   | ||||   | |  |||||||||| ||||| ||||||||||| ||| | || ||||||||| |  |||||||  ||||||| |||||||| ||||||||||| ||||| |||||||
gtgacataatatgtttctcattgaattttgggttgatgtattgtgttattttgatatggatgttctgtgtactttgacaaaatcatcatcaattttgatcgttttttactagttattatactgatataggggatttgtttgttgaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGA

upper sequence: GRMZM2G074898_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv13s0074g00140.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------------------------------------------------------------gttacttgctgttacattttttgtaataggtttgtaagctttatatagc-----atgatcttatggcaaggaaatacatctgtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA
                                                                                                           ||||    || || |  | | ||| ||   | |  ||  |     ||  |  |||      | |||  |||  || ||  |||| || || |||||||| || ||||||||| | ||||| |||||||| || |||||| |||||||||||||||| || ||||| || ||||| || ||||
gtaaaaatgtggatttaattacatattttcaagtctcatatgaatatttaatttgcttgattgcctatcaaaaaatatttaatttccttgatttatttagagagcagtgttggggttgttattgt-gctttttatattctgaatgtccattaatatttatataatctcgtaattgatcaattgtt--agGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTTAAGCCTTCAAAGCTTACCTGGACGGCTATGTATAGAAAGCAACATAAGA

upper sequence: GRMZM2G074898_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv16s0100g00650.t01 (Vitis vinifera), 3'ss of exon 1
---------------------------------------------gttacttgctgt-tacattttttgtaataggtt-----tgtaagctttatatagcatgatcttatggcaaggaaatacatctgttt---ttgta---gGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA
                                              | | |    |  ||   |   |  ||  | ||     | |  |||| || |  | | |  |  ||  |  |||   |||||||||   || ||   |||||| || |||||||| || ||||||||| | |||||||||||||| || |||||  | |||||||| |||||||| |||||||| |||||||||||||
gtaaaatgtgatgatattttcaatttggttctgtcaggggcatgtatcattcagagcatatcctacattcaaacgcttccctgtattggcttaattttacttcaattactgtaactgaatagcatctgtttcatttatatcagGTTTTTCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAACCGGCTTAAGCCATCGAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGA

upper sequence: GRMZM2G074898_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv08s0007g04210.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------------------------------gtta--cttgctgttacattttttgtaataggttt----gtaagctttatatagcatgatcttatggcaaggaaataca-tctgtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA
                                                                    ||||  |||  |  | |||| | |    | || |     ||   | |  | || | || |    || ||   || |||  ||  | | | ||||| || || |||||||| || ||||||||| | |||||||||||||| ||||||||  ||||||||||||||||||| |||||||||||||| || || |
gtaattttatagctcattaaaatttatgttctgtatcagattattagccaactaaatttctactgaatgttaatcttctttcttcattgtcttggttgggctcaggggttgacctcttgta-cttgtttaattgacattaaattactctcaatatatttagGTGTTTCTATTTGCCAATTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCATCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAACATAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211085458|gb|FL413527.1|FL413527
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211518470|gb|FL391754.1|FL391754
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211275568|gb|FL307670.1|FL307670
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211379540|gb|FL395178.1|FL395178
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCKCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|33466891|gb|CF243940.1|CF243940
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|61117725|gb|DN558686.1|DN558686
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211205227|gb|FL427932.1|FL427932
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|30088005|gb|CB886210.1|CB886210
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|14529476|gb|BI096609.1|BI096609
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211349078|gb|FL422792.1|FL422792
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211539244|gb|FL396305.1|FL396305
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211533526|gb|FL409955.1|FL409955
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211501617|gb|FL378298.1|FL378298
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|61117724|gb|DN558685.1|DN558685
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211481788|gb|FL382325.1|FL382325
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211423511|gb|FL387507.1|FL387507
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211202123|gb|FL177996.1|FL177996
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGC
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGC
EST: gi|211202120|gb|FL177993.1|FL177993
EST:     AGAAGATCTATCCTGGGAAAGGCNTCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTG
EST: gi|211520879|gb|FL379231.1|FL379231
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|15632310|gb|BI679403.1|BI679403
EST:     CATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: CATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211415704|gb|FL382754.1|FL382754
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211429599|gb|FL427249.1|FL427249
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|61117723|gb|DN558684.1|DN558684
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|161591814|gb|EY960879.1|EY960879
EST:     CGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: CGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|120480973|gb|EH211102.1|EH211102
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTCGCCAACTCGAAATGCAAGCGCTACTTCCACWACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211343699|gb|FL394269.1|FL394269
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCTAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|86470312|gb|DY236682.1|DY236682
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
EST: gi|211408570|gb|FL414978.1|FL414978
EST:     AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAG                         GTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG
genomic: AGAAGATCTATCCTGGGAAAGGCATCCGGTTTATTCGTGCTGATTCTCAGgttacttgct ... gtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtaagctttatatagcatgatcttatggcaaggaaatacatctgtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA
                                          tctgttttt  CT-rich tract
        tttatata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttacttgctgttacattttttgtaataggtttgtaagctttatatagcatgatcttatggcaaggaaatacatctgtttttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG