Sequence
atgc intronic sequence ATGC exonic sequencegtaatatttctttccttccccacattttttgctgacctcatcaccctctgtctttgtgcacattaacatcaatctcaattttgattttgtagaaagtggtgtaacattttattattaatgcagtatatgctgatggaagcatctgtttggatatcctacagAACCAGTGGAGTCCTATATATGATGTTGCTGCAATTTTAACTTCTATCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G074479_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g07240.1 (Oryza sativa), 3'ss of exon 3
gtaatatttctttccttccccacattttttgctgacctcatcaccctctgtctttgtgcacattaacatcaatctcaattttgattttgtagaaagtggtgtaacattttattattaatgcagtatatgctgatggaagcatctgtttggatatcctacagAACCAGTGGAGTCCTATATATGATGTTGCTGCAATTTTAACTTCTATCCAG
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gtaagctctcttcccgtgtgattatatattgttcaa-taattaccttacatttgtaaacaaataaagatc---ttcgtttttgaataatggaaaacttatttaacatcatactattcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG
upper sequence: GRMZM2G074479_T04 (Zea mays), 3'ss of exon 3
lower sequence: EFJ21576 (Selaginella moellendorffii), 3'ss of exon 3
gtaatatttctttccttccccacattttttgctgacctcatcaccctctgtctttgtgcacattaacatcaatctcaattttgattttgtagaaagtggtgtaacattttattattaatgcagtatatgctgatggaagcatctgtttggatatcctacagAACCAGTGGAGTCCTATATATGATGTTGCTGCAATTTTAACTTCTATCCAG
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--------------------------------------------------------------------------gtaagttcgtttattcgtagtgtc-tatcttccttacgcgctctcgcagTTTATGCCGATGGAAGCATTTGTCTCGACATCCTCCAAAATCAGTGGAGCCCGATCTATGATGTTGCCGCAATACTGACATCGATCCAG
upper sequence: GRMZM2G074479_T04 (Zea mays), 3'ss of exon 3
lower sequence: EFJ23951 (Selaginella moellendorffii), 3'ss of exon 3
gtaatatttctttccttccccacattttttgctgacctcatcaccctctgtctttgtgcacattaacatcaatctcaattttgattttgtagaaagtggtgtaacattttattattaatgcagtatatgctgatggaagcatctgtttggatatcctacagAACCAGTGGAGTCCTATATATGATGTTGCTGCAATTTTAACTTCTATCCAG
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--------------------------------------------------------------------------gtaagttcgtttattcgtagtgtc-tatcttccttacgcgctctcgcagTTTATGCCGATGGAAGCATTTGTCTCGACATCCTCCAAAATCAGTGGAGCCCGATTTATGATGTTGCCGCAATACTGACATCGATCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9824941|gb|BE575038.1|BE575038EST: AAACAAGCCACCAACTGTTCGATTTGTCTCTAGGATGTTTCATCCAAATA AACCAGTGGAGTCCTATATATGATGTTGCTGCAATTTTAACTTCTATCCAG
genomic: AAACAAGCCACCAACTGTTCGATTTGTCTCTAGGATGTTTCATCCAAATAgtaatatttc ... tatcctacagAACCAGTGGAGTCCTATATATGATGTTGCTGCAATTTTAACTTCTATCCAG
EST:
gi|211280163|gb|FL132357.1|FL132357EST: AAACAAGCCACCAACTGTTCGATTTGTCTCTAGGATGTTTCATCCAAATA AACCAGTGGAGTCCTATATATGATGTTGCTGCAATTTTAACTTCTATCCAG
genomic: AAACAAGCCACCAACTGTTCGATTTGTCTCTAGGATGTTTCATCCAAATAgtaatatttc ... tatcctacagAACCAGTGGAGTCCTATATATGATGTTGCTGCAATTTTAACTTCTATCCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttattattaatgcagtatatgctgatggaagcatctgtttggatatcctacagAACCAGTGGAGTCCTATATATGATGTTGCTGCAATTTTAACTTCTATCCAG
ttattaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatatttctttccttccccacattttttgctgacctcatcaccctctgtctttgtgcacattaacatcaatctcaattttgattttgtagaaagtggtgtaacattttattattaatgcagtatatgctgatggaagcatctgtttggatatcctacagAACCAGTGGAGTCCTATATATGATGTTGCTGCAATTTTAACTTCTATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC