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...caaattggaccttaatacaataaagcttatattagtgggtacattactgcagactatatatttccacatttctaatatagccattgttgtatcatgtcagGTGATGGAAATGCTGTTGCTGCCACGGGCAAAACCGAAATCTCAGCTGCACAAAAGAAAACTCAAACTAACATGAGGACCCTTAGAGGGCATACAGGTGC
species | Zea mays |
transcript | GRMZM2G074466_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGTTTAGCAGAGACAGAAGTTTAAGGGCCAGCTCTTTCAACCGAGCTA GTGATGGAAATGCTGTTGCTGCCACGGGCAAAACCGAAATCTCAGCTGCACEST: gi|32840932|gb|CD980613.1|CD980613
genomic: TATGTTTAGCAGAGACAGAAGTTTAAGAGCCAGCTCTTTCAACCGAGCTAgtaagttttc ... atcatgtcagGTGATGGAAATGCTGTTGCTGCCACGGGCAAAACCGAAATCTCAGCTGCAC
EST: TATGTTTAGCAGAGACAGAAGTTTAAGAGCCAGCTCTTTCAACCGAGCTA GTGATGGAAATGCTGTTGCTGCCACGGGCAAAACCGAAATCTCAGCTGCACEST: gi|71437502|gb|DR818552.1|DR818552
genomic: TATGTTTAGCAGAGACAGAAGTTTAAGAGCCAGCTCTTTCAACCGAGCTAgtaagttttc ... atcatgtcagGTGATGGAAATGCTGTTGCTGCCACGGGCAAAACCGAAATCTCAGCTGCAC
EST: TATGTTTAGCAGAGACAGAAGTTTAAGAGCCAGCTCTTTCAACCGAGCTA GTGATGGAAATGCTGTTGCTGCCACGGGCAAAACCGAAATCTCAGCTGCACEST: gi|71437503|gb|DR818553.1|DR818553
genomic: TATGTTTAGCAGAGACAGAAGTTTAAGAGCCAGCTCTTTCAACCGAGCTAgtaagttttc ... atcatgtcagGTGATGGAAATGCTGTTGCTGCCACGGGCAAAACCGAAATCTCAGCTGCAC
EST: TATGTTTAGCAGAGACAGAAGTTTAAGAGCCAGCTCTTTCAACCGAGCTA GTGATGGAAATGCTGTTGCTGCCACGGGCAAAACCGAAATCTCAGCTGCAC
genomic: TATGTTTAGCAGAGACAGAAGTTTAAGAGCCAGCTCTTTCAACCGAGCTAgtaagttttc ... atcatgtcagGTGATGGAAATGCTGTTGCTGCCACGGGCAAAACCGAAATCTCAGCTGCAC
actgcagactatatatttccacatttctaatatagccattgttgtatcatgtcagGTGATGGAAATGCTGTTGCTGCCACGGGCAAAACCGAAATCTCAGCTGCACAAAAGAAAACTCAAACTAACATGAGGACCCTTAGAGGGCATACAGGTGC
ttctaat putative branch site (score: 145)
acatttctaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaattggaccttaatacaataaagcttatattagtgggtacattactgcagactatatatttccacatttctaatatagccattgttgtatcatgtcagGTGATGGAAATGCTGTTGCTGCCACGGGCAAAACCGAAATCTCAGCTGCACAAAAGAAAACTCAAACTAACATGAGGACCCTTAGAGGGCATACAGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - -caataaa
- - - - - - - - - - - - - - - - - - - - - - -actgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgt