1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcatcacatactgttactctgtctggtttattgatttttgttaaatgaatgatctagctggccagcaatttttatagtctattttctgctaccatttcagGATGGCAAAAATGTGGGAGGACATGAAGATACATCACGCAAATCAGCTGAAAATTGTCCTAAATCTGAAGTCTGTTGATATTCCTGATTCCAATATTGAA
species | Zea mays |
transcript | GRMZM2G074377_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATCTCCGTGATAACCAACTGTACCCAAGACTATTGGATCTTACTGACCG GATGGCAAAAATGTGGGAGGACATGAAGATACATCACGCAAATCAGCTGAA
genomic: TATCTCCGTGATAACCAACTGTACCCAAGACTATTGGATCTTACTGACCGgtaccttttc ... accatttcagGATGGCAAAAATGTGGGAGGACATGAAGATACATCACGCAAATCAGCTGAA
tgaatgatctagctggccagcaatttttatagtctattttctgctaccatttcagGATGGCAAAAATGTGGGAGGACATGAAGATACATCACGCAAATCAGCTGAAAATTGTCCTAAATCTGAAGTCTGTTGATATTCCTGATTCCAATATTGAA
ccatttc CT-rich tract
aatttttatagtctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatcacatactgttactctgtctggtttattgatttttgttaaatgaatgatctagctggccagcaatttttatagtctattttctgctaccatttcagGATGGCAAAAATGTGGGAGGACATGAAGATACATCACGCAAATCAGCTGAAAATTGTCCTAAATCTGAAGTCTGTTGATATTCCTGATTCCAATATTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - cacatac
- - - - - -tgttact
- - - - - - - - - -tgtctgg
- - - - - - - - - - - - - - - - - -ttttgtt
- - - - - - - - - - - - - - - - - - - - - - atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccagca