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...atgttcagctgtattcttttgaggaaaaaaactcgtcttcttaatagtgtttttcctctcatccttttttacgatcacctattcctttatatctttatagAATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTTGCACTTGAGGAAGAAGTATTTCAGGCACCTGATATCCTGGGTCCTTCTG
species | Zea mays |
transcript | GRMZM2G074351_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACTTTGAGGGCATGGGTTCCTCAA AATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTTEST: gi|211141174|gb|FL018636.1|FL018636
genomic: TACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... atctttatagAATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTT
EST: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA AATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTTEST: gi|211475994|gb|FL018626.1|FL018626
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... atctttatagAATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTT
EST: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA AATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTT
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... atctttatagAATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTT
agtgtttttcctctcatccttttttacgatcacctattcctttatatctttatagAATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTTGCACTTGAGGAAGAAGTATTTCAGGCACCTGATATCCTGGGTCCTTCTG
ttcctttatatcttt CT-rich tract
tttatatctttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttcagctgtattcttttgaggaaaaaaactcgtcttcttaatagtgtttttcctctcatccttttttacgatcacctattcctttatatctttatagAATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTTGCACTTGAGGAAGAAGTATTTCAGGCACCTGATATCCTGGGTCCTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - tcagctg
- - - - - - - - - - - - aaaaaaa