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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC

Basic information

species Zea mays
transcript GRMZM2G074300_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g38000.2 (Oryza sativa), 3'ss of exon 3
gtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaattt----ctcaacaaacatcttt-ttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC
                              || ||||||  ||     |||||    | | |  |    ||  |||   |||    ||||||  || | ||  || | |  ||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||| || || ||||||||| | |
------------------------------gtttgtttggttcaactcaagcatcgtagtatttaaaaacctcatgatctttttggctcaacgcacttgttcattatcttttgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTCGACTGGGACCCCAAGGGCAAGGTTGGCCCGACCACCCCTCTGCCGGATCTTGTAACCATCCATGCTC

upper sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------------------------gtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcg--acgttccaaatgtaat-ttctcaacaaacatc-----tttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC
                                   |  ||||| ||    |   || || || |   ||| |     || || | | |  |||||  |  | | |   | | |    || | ||     |||     | || ||||| |  |||| ||| ||||||||||||| ||||||||||| |||||||| || |||||||||   || || || || || ||||| ||  |||| ||||||||||  |
gtatgttacatatccttggccatttctctgttaactgagtttttctg-gctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC

upper sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
---------------------------gtttgttttgctacaattgcccgttgtaatgtctgt--ttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC
                             |   | || |    ||||   ||       | ||  |||| |    | ||  |  || ||| | | |||     |    | ||| |  |||  | |  || | |  | ||||||||  |||||||||| || ||||||||||| ||||||||||| |||||||||   || || || ||||||||||| ||  |||| ||||||||||  |
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaa-gttgtctgtaatgtatcttag-aaatgtttcgttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC

upper sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
lower sequence: PP1S31_178V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------gtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctca--acaaacatctttttctg---------tcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC
                 ||  | ||| ||   |   |||||  | ||   |||| |       |    | ||||||    | | ||      || ||| | |  || ||  ||   || ||         |  ||||||| ||  |||| |||||||| || ||||||||||||||||||||||||||||||   || || || || || ||||| ||  |||| ||||||||||  |
gtattcttgacagctttttaatcttgttagtctcaaccgtt-cactga--gtttcttcaattattgtgatttcattcggaaggctcgtttattagttttttactacgaatctcaggttttggatgtatgtttttgcagGGAGTGTTGGGCATCAAGGTTAAAATCATGCTTGACTGGGACCCGAAGGGCAAGCAAGGACCTATGACTCCCCTTCCAGATGTGGTTACCATCCATATGC

upper sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------------------------gtttgttttgctacaattgcccgttgtaatgtctgt--ttgtctctgggtaagcacttc-attttcgacgttcca--aatgtaatttctcaacaaacatc---------tttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC
                                      |  || |||   | |   |     |  | ||  |  |||  |     |||  | ||| ||  | || ||| ||  | |    |  ||| ||  |              | |||  || ||||||| ||  ||||||||||||| ||||||||||| |||||||| || || |||||    || || || || || || || ||  |||| |||||||| |  |
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC

upper sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
lower sequence: PP1S487_22V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------------------gtttgttt-tgctacaa---ttgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC
                                 |||| ||  ||||| |    |    |  |   |   |  ||  | | |        || |||||||| ||     |||| | |   ||   ||    ||||  | |   |||||||| ||  ||||||||||||||||||| ||||| ||||||||||| |||| ||||   ||  |  | || |  ||||| ||  |||||||||| || |  |
gcacgtgtggacattttttgtctaatggtggctgtttcttcatgctagagacctattacacttctacaacgtttcatgtttttaatgctacatcattttctacag---aaatatgaga-cttgtcagttgtcttcct-tactgtgcagGGAGTATTGGGTATCAAGGTGAAGATTATGCTCGACTGGGACCCCAAGGTCAAGCAAGGATCTGTGACTCTACTTCCAGATGTGGTGACCATTCACATGC

upper sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 5
----gtttgttttgctacaattgcccgttgtaatgtctgtttgtct---ctgggtaagcacttcattttcg----acgttccaaatgtaatttctcaacaaacatcttttt------ctgtcgt--gcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC
    ||   | ||  ||   ||    ||  | |  | | | || |    || | |     | || |||| |    |  | || |||  | | | |  ||      ||||||      ||||  |  |||||| ||  |||| |||||||| ||||||||||| ||||||||||| |||||||||   ||||| || ||||||||||| ||  |||| || |||||||  |
gtatgtggatcttcatagtgtttttggtcttcaattttctctgacgatgctagatttcgtcatcgtttttgctctatatacctaatccagtgtattgacgtgttacttttttaattactgttcttggcagGGAGTGTTGGGCATCAAGGTAAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGCCCCATGACCCCTCTTCCAGATGTGGTTACTATCCATATGC

upper sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
gtttgttttgctacaattgcccgtt-gtaatgtctgtttgtctctgggtaagcact---tcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgt---cgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC
||               || ||||  |||    || |||    || |  |   | |   | ||  |||  |||||  | || | |    |    |    |  ||  ||     | ||||| || ||||| || ||||||||||||||||| |||||||| || ||||| |||   || || || || || ||||| ||  | ||||| || || |  |
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC

upper sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
lower sequence: EFJ31038 (Selaginella moellendorffii), 3'ss of exon 5
gtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC
                                            | | ||| |||  ||  |    | |    ||  | |||||    || |||    || ||  | |||||| ||| |||| |||||||||||||||||||| |||||||| || |||||||||   || |||   || || || |||||| ||||||| |||||    |
--------------------------------------------gtgcaagaactcgatcgttt-tgatttggatccagtttct----aagcattggattgtgctg-gcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
lower sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
gtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC
                                            |   ||| |||  ||  |    | |    ||  | ||||| | ||      || | ||| |  |||||| ||| |||| |||||||||||||||||||| |||||||| || |||||||||   || |||   || || || |||||| ||||||| |||||    |
--------------------------------------------gtacaagaactcgatcattt-tgatttggatccagtttctaagcat-tggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
lower sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 5
gtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC
                                            | | ||| |||  ||  |    | |    ||  | ||||| | ||      || |||||    |||||| ||| |||| |||||||||||||||||||| |||||||| || |||||||||   || |||   || || || |||||| ||||||| |||||    |
--------------------------------------------gtgcaagaactcgatcgttt-tgatttggatccagtttctaagcat-tggattgttctg----gcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88753248|gb|DY537389.1|DY537389
EST:     CTCCTCAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|18177081|gb|BM378291.1|BM378291
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|32848633|gb|CD988314.1|CD988314
EST:     ACATTGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: ACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|21988014|gb|BQ779542.1|BQ779542
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|110195743|gb|EC877640.1|EC877640
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|5455784|gb|AI833474.1|AI833474
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|15053893|gb|BI359438.1|BI359438
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|89251253|gb|DY623039.1|DY623039
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|29576817|gb|CB616929.1|CB616929
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|9732270|gb|BE511022.1|BE511022
EST:     CATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|211357463|gb|FL472121.1|FL472121
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|211129665|gb|FL448923.1|FL448923
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|211286416|gb|FL307757.1|FL307757
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|28568922|gb|CB280797.1|CB280797
EST:     CCGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|37397796|gb|CF636206.1|CF636206
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|211289717|gb|FL361719.1|FL361719
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAG--C
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|111193194|gb|EE291330.1|EE291330
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|71436667|gb|DR817717.1|DR817717
EST:     CGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|29129878|gb|CB380582.1|CB380582
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|33101603|gb|CF061563.1|CF061563
EST:     GTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: GTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|22543011|gb|BU093449.1|BU093449
EST:     CAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|78108620|gb|DV527038.1|DV527038
EST:     CACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|33096193|gb|CF056187.1|CF056187
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|113589011|gb|DW753808.1|DW753808
EST:     AATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: AATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|4886195|gb|AI677315.1|AI677315
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|6127310|gb|AW129835.1|AW129835
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC
                                   catctttttctgtc  CT-rich tract
               aaatgtaattt  TA-rich tract