Sequence
atgc intronic sequence ATGC exonic sequence...catttgtttaatattctagtgtcttctatttctgttcgtaaaaacctaatgttcttgtttttcaactcattgtatcaaaatttctttcgctgttatgcagTTCTTTGTCTTGAGAGACTATGCAAGAGAAACTCTTTCTTTGCGATGGCGATCTTGGATGACAAGTTATTATATGAAGCGTTACTTTAAAAACAGAACTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G074103_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g11946.2 (Oryza sativa), 3'ss of exon 3
catttgtttaatattctagtgtcttctatttctgt-tcgtaaaaacc-taatgttcttgtttttcaac-tcattgtatcaaaatttc---tttcgctgttatgcagTTCTTTGTCTTGAGAGACTATGCAAGAGAAACTCTTTCTTTGCGATGGCGATCTTGGATGACAAGTTATTATATGAAGCGTTACTTTAAAAACAGAACTT
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------tctatcaatcaaggatatgtactttctgtgttgcagaatcagcaacctgtattcctatgagtataattgtgttctgatttctgctctcactatactgcagTTCTTTGTCTTGAGAGACTATGCAAGGGAGACCCTTTCTTTAAGATGGCGATCTTGGATGACAAGTTATTACATGAAGCGCTACTTTAAAAATAGAACTT
upper sequence: GRMZM2G074103_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G17110.1 (Glycine max), 3'ss of exon 5
catttgtttaatattct--agtgtcttctatttctgttcgtaaaaacctaatgttcttgtttttcaactcattgtatcaaaatttctttcgctgttatgcagTTCTTTGTCTTGAGAGACTATGCAAGAGAAACTCTTTCTTTGCGATGGCGATCTTGGATGACAAGTTATTATATGAAGCGTTACTTTAAAAACAGAACTT
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tttatgcttgctgttctgcattgtttttggtgtgtcatgctcatatccttat-tccaaccttctgcacatgtt-tcttaccctgttcatcattgcattgcagATTTTTGTGTTGAGAGATTATGCAAGAGAAACTCTTTCTTTGAGATGGAGATCTTGGATGACAAGATATTACATTGATCGCTATCTGAAGAATCAAACTT
upper sequence: GRMZM2G074103_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv19s0085g01190.t01 (Vitis vinifera), 3'ss of exon 3
------catttgtttaatattctagtgtcttctatttctgttcgtaaaaacctaatgttcttgtttttcaactcattgtatcaaaatttctttcgctgttatgcagTTCTTTGTCTTGAGAGACTATGCAAGAGAAACTCTTTCTTTGCGATGGCGATCTTGGATGACAAGTTATTATATGAAGCGTTACTTTAAAAACAGAACTT
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ctaggcgattttcatagtatcattgggt-tcatattcagtttcatgtgcttttgatctttctaatttgtatattgct-tgctgcattatcttt----gtcttgcagTTCTTTGTGTTGAGGGATTATGCCAGAGAAATTCTTGCTTTAAGATGGAGATCTTGGATGACAAGCTATTACATGGAACGCTATCTAAAGAATTGGACAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctaatgttcttgtttttcaactcattgtatcaaaatttctttcgctgttatgcagTTCTTTGTCTTGAGAGACTATGCAAGAGAAACTCTTTCTTTGCGATGGCGATCTTGGATGACAAGTTATTATATGAAGCGTTACTTTAAAAACAGAACTT
acctaat putative branch site (score: 3)
tttctttcgctgtt putative PPT
attgtatcaaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catttgtttaatattctagtgtcttctatttctgttcgtaaaaacctaatgttcttgtttttcaactcattgtatcaaaatttctttcgctgttatgcagTTCTTTGTCTTGAGAGACTATGCAAGAGAAACTCTTTCTTTGCGATGGCGATCTTGGATGACAAGTTATTATATGAAGCGTTACTTTAAAAACAGAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC