1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatcgcaacctgatcgacttgtatttagttactatatatgaattggacattattaatccttgatgcaataagcaatattgttcttattcctacttctcagGTCGACCCTGTGGTTTACAACATGCTACATGAAGATCCTGGCAATGTAAGTTACTCAGCTGTAGGTGGGTTGTCAGATCAAATAAGGGAACTCAGAGAAT
species | Zea mays |
transcript | GRMZM2G074037_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTTCTTGACATGACAACACTTACCATTATGCGCATTCTGCCACGTGAG GTCGACCCTGTGGTTTACAACATGCTACATGAAGATCCTGGCAATGTAAGTEST: gi|211075772|gb|FL462562.1|FL462562
genomic: TTGTTCTTGACATGACAACACTTACCATTATGCGCATTCTGCCACGTGAGgtatatgttt ... tacttctcagGTCGACCCTGTGGTTTACAACATGCTACATGAAGATCCTGGCAATGTAAGT
EST: TTGTTCTTGACATGACAACACTTACCATTATGCGCATTYTGCCACGTGAG GTCGACCCTGTGGTTTACAACATGCTACATGAAGATCCTGGCAATGTAAGT
genomic: TTGTTCTTGACATGACAACACTTACCATTATGCGCATTCTGCCACGTGAGgtatatgttt ... tacttctcagGTCGACCCTGTGGTTTACAACATGCTACATGAAGATCCTGGCAATGTAAGT
gacattattaatccttgatgcaataagcaatattgttcttattcctacttctcagGTCGACCCTGTGGTTTACAACATGCTACATGAAGATCCTGGCAATGTAAGTTACTCAGCTGTAGGTGGGTTGTCAGATCAAATAAGGGAACTCAGAGAAT
ttgttcttattcctac CT-rich tract
aatattgttcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcgcaacctgatcgacttgtatttagttactatatatgaattggacattattaatccttgatgcaataagcaatattgttcttattcctacttctcagGTCGACCCTGTGGTTTACAACATGCTACATGAAGATCCTGGCAATGTAAGTTACTCAGCTGTAGGTGGGTTGTCAGATCAAATAAGGGAACTCAGAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - -tgtattt
- - - - - - - - - - - - - - - - - - - tgaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgca