1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattttttttccttcagctttactgtagactttctgttgccattcttgttggtgtcgcaacatgtttatctgctaaacttgaaatttattacaaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCGCTTTCAGGGATGATGGTTCAACAGCTTCAACTGCACTTTTGGTGGGTGA
species | Zea mays |
transcript | GRMZM2G073788_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA GTGAAACATATCAGAAAACAGATACEST: gi|71438954|gb|DR820004.1|DR820004
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATAC
EST: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA GTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCGEST: gi|149077211|gb|EE165878.2|EE165878
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
EST: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA GTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCGEST: gi|50330958|gb|CO526084.1|CO526084
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
EST: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA GTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCGEST: gi|149080584|gb|EE169627.2|EE169627
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
EST: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA GTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCGEST: gi|149078330|gb|EE167097.2|EE167097
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
EST: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA GTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCGEST: gi|50326055|gb|CO521181.1|CO521181
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
EST: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA GTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCA
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCA
tgttggtgtcgcaacatgtttatctgctaaacttgaaatttattacaaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCGCTTTCAGGGATGATGGTTCAACAGCTTCAACTGCACTTTTGGTGGGTGA
tgctaaa putative branch site (score: 2)
taaacttgaaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttttttccttcagctttactgtagactttctgttgccattcttgttggtgtcgcaacatgtttatctgctaaacttgaaatttattacaaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCGCTTTCAGGGATGATGGTTCAACAGCTTCAACTGCACTTTTGGTGGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG