Sequence
atgc intronic sequence ATGC exonic sequencegttattggctgagcttattcagtttttcactttgtttgatttatatggctcctgtcttaaaacaatgaccggaattattttatgtgttccatagGACTTCGAATACACTGAGTTGAGCACCGTTTTGCAATATTATCCTCATGGTTATCATGGAGTTGACAAAGAGGGGAGACCTGTTTACATTGAAAGGCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G073571_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g04020.1 (Oryza sativa), 3'ss of exon 4
gttattggctgagcttattcagtttttcactttgtttgatttatatggctcctgtcttaaaacaatgaccggaattattttatgtgttccatagGACTTCGAATACACTGAGTTGAGCACCGTTTTGCAATATTATCCTCATGGTTATCATGGAGTTGACAAAGAGGGGAGACCTGTTTACATTGAAAGGCTTG
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gttagtgttcttgcttgt---gcctataaaacaatttggattttgt-----ttggctataaataatgcctgtaactacatttc----tctgtagGATTTTGATTACAATGAGTTAGACGCTGTTCTGCAATATTATCCTCACGGTTATCATGGAGTTGACAAAGACGGGAGACCTGTTTATATTGAAAGGCTTG
upper sequence: GRMZM2G073571_T03 (Zea mays), 3'ss of exon 3
lower sequence: AT2G21520.1 (Arabidopsis thaliana), 3'ss of exon 2
gttattggctgagcttattcagtttttcactttgtt-tgatttatatggctcctgtcttaaaacaatgaccggaattattttatgtgttccat-agGACTTCGAATACACTGAGTTGAGCACCGTTTTGCAATATTATCCTCATGGTTATCATGGAGTTGACAAAGAGGGGAGACCTGTTTACATTGAAAGGCTTG
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--------------gtatgctattaaatagaagatagtagtttaaaccattgttgtct-------gtttttgtaac-gttttatttctctcgttagGATTTTGATTTCGAAGAGATTAATGAAGTTTTGAAACATTACCCACAATGTTATCACGGTGTTGACAAAGAAGGTAGACCTATTTACATTGAAAGGCTAG
upper sequence: GRMZM2G073571_T03 (Zea mays), 3'ss of exon 3
lower sequence: AT1G75370.1 (Arabidopsis thaliana), 3'ss of exon 3
gttattggctgagcttattcagtttttcactttgtttgatttatatggctcctgtcttaaaacaatgaccggaattattttatgtgt-tccatagGACTTCGAATACACTGAGTTGAGCACCGTTTTGCAATATTATCCTCATGGTTATCATGGAGTTGACAAAGAGGGGAGACCTGTTTACATTGAAAGGCTTG
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--------gtgaa-ttacatgtttttaaaaaaaatcttaat-atgttacttttaatctcatgtgatggttttaatctcaatatgtgtgttaatagGATTTTGAATTTGAAGAGTTTGATGAAGTTCTGAAATACTACCCTCATGGTTATCATGGTGTTGATAAAGAAGGAAGGCCTGTTTACATTGAAAGATTAG
upper sequence: GRMZM2G073571_T03 (Zea mays), 3'ss of exon 3
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 3'ss of exon 3
--------------------gttattgg-ctgagcttattcagtt--tttcactttgtttgatttatatggctcctgtcttaaaacaatgaccggaatt---attttatgtgttccatagGACTTCGAATACACTGAGTTGAGCACCGTTTTGCAATATTATCCTCATGGTTATCATGGAGTTGACAAAGAGGGGAGACCTGTTTACATTGAAAGGCTTG
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gtaatctcaaatttcatcccatgattagattctattttctgaagcaatgttccattactggtttctcagatctattggtttgttaacattgttctaattgagatttcatgtttctcccagGATTTTGAGTTCAAAGAGTTGAACGAAGTACTCAAGTACTATCCTCAGGGTTATCACGGTGTGGATAAGGAGGGGAGACCCGTTTATATTGAAAGACTTG
upper sequence: GRMZM2G073571_T03 (Zea mays), 3'ss of exon 3
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 4
gttattggctgagcttattcagtttttcactttgtttgatttatatggctcctgtcttaaaacaa------tgaccgg---aattattttatgtgttccatagGACTTCGAATACACTGAGTTGAGCACCGTTTTGCAATATTATCCTCATGGTTATCATGGAGTTGACAAAGAGGGGAGACCTGTTTACATTGAAAGGCTTG
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--gtctatctatctatatatgcatatatcctttcttcaattt-tataagtgctgttttgtaccaaattctttgacatgtttacctgtttgatattgttatcagGATTTTGAGTTCAAAGAGTTGAATGAGGTGTTGAAATACTATCCCCATGGTCATCATGGTGTGGATAAGGAGGGAAGACCTGTTTACATTGAAAGACTAG
upper sequence: GRMZM2G073571_T03 (Zea mays), 3'ss of exon 3
lower sequence: PP1S169_81V6.1 (Physcomitrella patens), 3'ss of exon 3
---gttattggctgagcttattcagtttttcactttgtt-tgatttatatggctcc-tgtcttaaaacaatgaccggaattattttatgtgttccat-agGACTTCGAATACACTGAGTTGAGCACCGTTTTGCAATATTATCCTCATGGTTATCATGGAGTTGACAAAGAGGGGAGACCTGTTTACATTGAAAGGCTTG
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ttggttttaggatactggaacatgcttcgagatattggggtgctttacatgcccacatgtacaacggttctcattgatgatatttgtttcgtttcttcagGACTTCGTTTTTACTGAAATTGACAAAGTGAGGAATTACTATCCTCAAGGGTATCATGGAGTGGATAAAGAAGGCAGACCTGTGTATATTGAAAGGATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatatggctcctgtcttaaaacaatgaccggaattattttatgtgttccatagGACTTCGAATACACTGAGTTGAGCACCGTTTTGCAATATTATCCTCATGGTTATCATGGAGTTGACAAAGAGGGGAGACCTGTTTACATTGAAAGGCTTG
aattattttatgtgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttattggctgagcttattcagtttttcactttgtttgatttatatggctcctgtcttaaaacaatgaccggaattattttatgtgttccatagGACTTCGAATACACTGAGTTGAGCACCGTTTTGCAATATTATCCTCATGGTTATCATGGAGTTGACAAAGAGGGGAGACCTGTTTACATTGAAAGGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG