1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagatacgagaacaatgcatttcaagcttgtaaaaatggtatctgccggttggtggatatactgatctgtttgtccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGGTATTCAGAATCTTCAGACCTGGCCAGCTGAATACTGTTTTACCAT
species | Zea mays |
transcript | GRMZM2G073535_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGANCCAGAGCTAGGCCAG GTCATTCAGCTCCAAGGTGATCAGCGCAEST: gi|9952760|gb|BE639223.1|BE639223
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCA
EST: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG GTCATTCAGCTCCAAGGTGACCAGCGCAAGAAT
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAAT
tgtaaaaatggtatctgccggttggtggatatactgatctgtttgtccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGGTATTCAGAATCTTCAGACCTGGCCAGCTGAATACTGTTTTACCAT
tactgat putative branch site (score: 2)
tttgtcc putative PPT
atatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatacgagaacaatgcatttcaagcttgtaaaaatggtatctgccggttggtggatatactgatctgtttgtccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGGTATTCAGAATCTTCAGACCTGGCCAGCTGAATACTGTTTTACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA