1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcaaaacattacctccagggtattttttttcaggagcatgccagaattgtattatgctaaacaatgtaaatttgataccaaatggtatttatttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTTCTGAGGCTGTTGGTTCAGAATAGAATTGCTGAGTTCCATACTGAGCTG
species | Zea mays |
transcript | GRMZM2G073077_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211221445|gb|FL389599.1|FL389599
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|23357704|gb|BU645353.1|BU645353
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|74240003|gb|DT647917.1|DT647917
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|5555446|gb|AI881397.1|AI881397
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211343978|gb|FL410639.1|FL410639
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211202662|gb|FL427928.1|FL427928
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|71428537|gb|DR809587.1|DR809587
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|21987255|gb|BQ778783.1|BQ778783
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|56382239|gb|CV984908.1|CV984908
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211521193|gb|FL395748.1|FL395748
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGCCAGCTCAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211466169|gb|FL380588.1|FL380588
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211160049|gb|FL415236.1|FL415236
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCNAGAGGAGTACCCAATTTKGGGACTCAATCEST: gi|211045344|gb|FL397284.1|FL397284
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACC-AGAGGAGTACCCAATTTTGGGACTCAATC
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211259601|gb|FL417871.1|FL417871
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|19057828|gb|BM736495.1|BM736495
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|120480690|gb|EH210959.1|EH210959
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCYAATTTTGGGACTCAATCTEST: gi|211149119|gb|FL417450.1|FL417450
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|76013186|gb|DT940356.1|DT940356
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211273315|gb|FL388187.1|FL388187
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211238673|gb|FL405238.1|FL405238
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211244803|gb|FL372839.1|FL372839
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|76013187|gb|DT940357.1|DT940357
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211123288|gb|FL412657.1|FL412657
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGCCAGCTCAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|60343651|gb|DN210624.1|DN210624
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|32910399|gb|CF015211.1|CF015211
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211488047|gb|FL401996.1|FL401996
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211180868|gb|FL091536.1|FL091536
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTRAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211071747|gb|FL413442.1|FL413442
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|71331372|gb|DR802521.1|DR802521
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211403085|gb|FL391554.1|FL391554
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|148947219|gb|EC892573.2|EC892573
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211290626|gb|FL412730.1|FL412730
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211257382|gb|FL426637.1|FL426637
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|60358231|gb|DN225204.1|DN225204
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|56382240|gb|CV984909.1|CV984909
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|50327367|gb|CO522493.1|CO522493
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|32910449|gb|CF015261.1|CF015261
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|9255128|gb|BE345596.1|BE345596
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211207035|gb|FL397427.1|FL397427
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAAGAGTACEST: gi|211368876|gb|FL402356.1|FL402356
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTAC
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTEST: gi|211144477|gb|FL393223.1|FL393223
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
attgtattatgctaaacaatgtaaatttgataccaaatggtatttatttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTTCTGAGGCTGTTGGTTCAGAATAGAATTGCTGAGTTCCATACTGAGCTG
tttattt CT-rich tract
aaatggtatttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaaacattacctccagggtattttttttcaggagcatgccagaattgtattatgctaaacaatgtaaatttgataccaaatggtatttatttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTTCTGAGGCTGTTGGTTCAGAATAGAATTGCTGAGTTCCATACTGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
tcaaaaca
- - - - - acctcca
- - - - - - - - - - - - - - - - - agcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -atgctaa