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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgccaacaattagacaatttaagctccaatatttgttgcttttgttgggaaaagtgcaacttcgacatttttgcttggtttgcctttgtggattcaacagATACAGTGAATATAAGAGATTACGTGCGGCTATTGATCAACATGAAGGTGGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAG

Basic information

species Zea mays
transcript GRMZM2G073054_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073054_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g33460.1 (Oryza sativa), 3'ss of exon 3
cgccaacaattagacaatttaagctccaatatttgttgcttttgttgggaaaagtgc------aacttcgacat-ttttgcttggtttgcctttgtggattcaacagATACAGTGAATATAAGAGATTACGTGCGGCTATTGATCAACATGAAGGTGGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAG
      ||| |   ||| ||||  ||  |||| ||  |||||||||||||||  | |      ||||||   || | ||  ||||| ||| |  ||||  | ||||||||||||||||| |||||| | ||||| |||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||| || |||||
------caactcagcaaattaatttctgatatctggcgcttttgttgggaaacctactctgttaacttcagtatatcttttttggtatgcatg-gtggtatgaacagATACAGTGAATACAAGAGAATGCGTGCAGCTATTGACCAACATGAAGGTGGCTTGGATGCATTTTCTCGTGGTTACGAAAAGCTTGGATTCACCCGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149040593|gb|EE046834.2|EE046834
EST:     TATGAGATTGACCCAATGTTGGAAGGGTTTCGGGGTCACCTTGACTACCG                         ATACAGTGAATATAAGAGATTACGTGCGGCTATTGATCAACATGAAAGTGG
genomic: TATGAGATTGACCCAATGTTGGAAGGGTTTCGGGGTCACCTTGACTACCGgtaagctgtt ... gattcaacagATACAGTGAATATAAGAGATTACGTGCGGCTATTGATCAACATGAAGGTGG
EST: gi|101383106|gb|EB813605.1|EB813605
EST:     TATGAGATTGACCCAATGTTGGAAGGGTTTCGGGGTCACCTTGACTACCG                         ATACAGTGAATATAAGAGATTACGTGCGGCTATTGATCAACATGAAGGTGG
genomic: TATGAGATTGACCCAATGTTGGAAGGGTTTCGGGGTCACCTTGACTACCGgtaagctgtt ... gattcaacagATACAGTGAATATAAGAGATTACGTGCGGCTATTGATCAACATGAAGGTGG
EST: gi|89253055|gb|DY624841.1|DY624841
EST:     TATGAGATTGACCCAATGTTGGAAGGGTTTCGGGGTCACCTTGACTACCG                         ATACAGTGAATATAAGAGATTACGTGCGGCTATTGATCAACATGAAGGTGG
genomic: TATGAGATTGACCCAATGTTGGAAGGGTTTCGGGGTCACCTTGACTACCGgtaagctgtt ... gattcaacagATACAGTGAATATAAGAGATTACGTGCGGCTATTGATCAACATGAAGGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggaaaagtgcaacttcgacatttttgcttggtttgcctttgtggattcaacagATACAGTGAATATAAGAGATTACGTGCGGCTATTGATCAACATGAAGGTGGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAG
                   acattttt  TA-rich tract