1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatggtcgtatggatcctacagtttgacagtagcacttgcagcaatcaaataagggaaataagctggtccatacatattttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATA
species | Zea mays |
transcript | GRMZM2G072865_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTG GAGTTCTTAAGGAACCCAGAAAGATATATEST: gi|32925973|gb|CF030785.1|CF030785
genomic: CTGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTGgtatggtcgt ... ttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATAT
EST: CTGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTG GAGTTCTTAAGGAACCCAGAAAGATATAEST: gi|32926844|gb|CF031656.1|CF031656
genomic: CTGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTGgtatggtcgt ... ttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATA
EST: CTGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTG GAGTTCTTAAGGAACCCAGAAAGATATATEST: gi|32929777|gb|CF034589.1|CF034589
genomic: CTGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTGgtatggtcgt ... ttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATAT
EST: CTGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTG GAGTTCTTAAGGAACCCAGAAAGATATATEST: gi|32926859|gb|CF031671.1|CF031671
genomic: CTGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTGgtatggtcgt ... ttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATAT
EST: CTGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTG GAGGTCTTAAGGAACCCAGAAAGATATATEST: gi|32926579|gb|CF031391.1|CF031391
genomic: CTGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTGgtatggtcgt ... ttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATAT
EST: CTGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTG GAGTTCTTAAGGAACCCAGAAAGATATAT
genomic: CTGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTGgtatggtcgt ... ttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATAT
acttgcagcaatcaaataagggaaataagctggtccatacatattttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATA
ttttttgttc CT-rich tract
atacatattttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtcgtatggatcctacagtttgacagtagcacttgcagcaatcaaataagggaaataagctggtccatacatattttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA