Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tatggtcgtatggatcctacagtttgacagtagcacttgcagcaatcaaataagggaaataagctggtccatacatattttttgttcaggagttcttaaggaacccagaaagatatattcgtctcggtgctcgccctcctCGTGGTGTCTTATTG

Basic information

species Zea mays
transcript GRMZM2G072865_T04
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G072865_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g43350.1 (Oryza sativa), 3'ss of exon 3
----------tatggtcg----ta-tggatcctacagtttgacagtagcact-tgc---agcaatcaaat-aagggaaataagctggtc-catacatattttttgttcaggagttcttaaggaacccagaaagatatattcgtctcggtgctcgccctcctCGTGGTGTCTTATTG
          |||| ||     || |||    | |||||   || |   | | |||   | |  |  | |  |||| |||||||| ||   ||    || || ||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||| || |||||||| |||
gtatgtgttttatgctcaatgttactggtatatgcagttatccactgatattatgccttatctgttgactcgaggggaataagctagttatatcttaatcttatgttcagGAGTTCCTAAGGAACCCAGAAAGATATATTCGTCTTGGTGCGCGACCTCCACGAGGTGTCTTGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32925296|gb|CF030108.1|CF030108
EST:     TGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTGG                         CGTGGTGTCTTATTG
genomic: TGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTGGtatggtcgta ... tcgccctcctCGTGGTGTCTTATTG
EST: gi|32925381|gb|CF030193.1|CF030193
EST:     TGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTGG                         T
genomic: TGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTGGtatggtcgta ... tcgccctcct-
EST: gi|32925381|gb|CF030193.1|CF030193
EST:     TGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTGG                         T
genomic: TGATGTGGCTGGAGTAGATGAGGCAAAAGAAGAGCTTGAAGAAATTGTGGtatggtcgta ... tcgccctcct-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaggagttcttaaggaacccagaaagatatattcgtctcggtgctcgccctcctCGTGGTGTCTTATTG
                                            ctcgccctcct  CT-rich tract
                       aaagatatatt  TA-rich tract