Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttagcatatatatatagtttatgaataacaactacatgcatcacatatcctattaactaattgacgtatagtatgagacctgtttttgtacgttgcagGTGAGGAAGGAGAGACTGGGCGATAGAATAACTGCTCTTCATCAGATCGTTTCCCCGTTTGGAAAG

Basic information

species Zea mays
transcript GRMZM2G072238_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G072238_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g14010.1 (Oryza sativa), 3'ss of exon 3
---acttagcatatatatatagt-ttatgaataaca-actacatgcatca-catatcctattaactaattgacgtatagtatgagacctgtttttgtacgttgcagGTGAGGAAGGAGAGACTGGGCGATAGAATAACTGCTCTTCATCAGATCGTTTCCCCGTTTGGAAAG
      |||  |  || |  | | |  || || |   | || ||   | | ||||  |  |  | ||   |   | |    || ||      |||||   || ||||||||||||||||| || || |||||||||||||| ||||||||||| || ||||| ||||| |||
tggcagtagtttccatttggaatatcttggattatgtagtatatatgttaacataatccttacattaggaggtttcttaggtgtgataa---tttgt---tttcagGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATCCCCATTTGGCAAG

upper sequence: GRMZM2G072238_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA07G02120.1 (Glycine max), 3'ss of exon 4
-------acttagcatatatatatagtttatgaataacaactacatgcatcacatatcctattaactaattgacgtatagtatgagacctgtttttgtacgttgcagGTGAGGAAGGAGAGACTGGGCGATAGAATAACTGCTCTTCATCAGATCGTTTCCCCGTTTGGAAAG
            | | || |  ||  |   ||||  | |   | |  ||| |  |    || |||||  ||     ||| ||||| | ||    ||  |  |  |||||||| |||||||   | || ||||||||||| |||||||| ||| | ||||||||||| ||||||
ttctttctgcaggtaaatgtgcatgatagttgaaagagagaaaaacacatgaattcatgtactaact--ttcttaaatattatgaaatct---cttaaaaat--cagGTGAGAAAGGAGAAGTTAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTTCCCCGTTCGGAAAG

upper sequence: GRMZM2G072238_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G21770.2 (Glycine max), 3'ss of exon 3
acttagcatatatatatagtttatgaataacaactacatgcatcacatatcc-tattaactaattgacgtatagtatgagacctgtttttgtacgttgcagGTGAGGAAGGAGAGACTGGGCGATAGAATAACTGCTCTTCATCAGATCGTTTCCCCGTTTGGAAAG
|  ||  ||||  ||     ||   | | | ||  |||        ||     || ||||| |    | |  | ||| |       | |||||  |  |||||||| |||||||  || || ||||||||||| |||||||| ||| | |||||||| || ||||||
aggtaaaatatgcatgatagttgaaagtgagaaaaacacatgatgaattcatgtactaacttagcttccttaaatattatgaaatctcttgta-atcacagGTGAGAAAGGAGAAGCTAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTTCCCCATTCGGAAAG

upper sequence: GRMZM2G072238_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv09s0002g04120.t01 (Vitis vinifera), 3'ss of exon 3
-------acttagcatatatatatagtttatgaataacaactacatgcatcacatatcctattaactaattgacgtatagtatgagacctgtttttgtacgttgcagGTGAGGAAGGAGAGACTGGGCGATAGAATAACTGCTCTTCATCAGATCGTTTCCCCGTTTGGAAAG
       |   |  | | | | | | | | |  | ||||   | |    | |  || | |  |  ||  || |  |||| ||    |  |  | | | ||    |||||||| |||||||  ||||| ||||||||||| || ||||| ||| | |||||||| |||||||||
aaacagtaaagaaaaaagagagaaattctctagaaaacaga-aaactagtaatttaacattctttctt-tttatatatattaattaatttactct-gaac----cagGTGAGAAAGGAGAAGCTGGGTGATAGAATAACAGCCCTTCACCAGTTAGTTTCCCCATTTGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatcctattaactaattgacgtatagtatgagacctgtttttgtacgttgcagGTGAGGAAGGAGAGACTGGGCGATAGAATAACTGCTCTTCATCAGATCGTTTCCCCGTTTGGAAAG
                                       tttttgt  CT-rich tract
       tattaactaattga  TA-rich tract