1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agactgttacgcgagatcattgtgcactcttgtccagttgttctattcccccaagagattctgtgcatgtgctaacatccttctcttgaaaacatggaagGCGAGGTGATCTCCGAGAAATACGTTCTCGAGTACGGGACCGATTGCTTAGAGATGCATGTCGGAGCCATCGAACGACCTGGTGAGCGCGTGCTGATCAC
species | Zea mays |
transcript | GRMZM2G071846_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCTATTGGCGCCAAGTTCATACCTTTGCGCAAGCCTAGGAAGCTCCCCG GCGAGGTGATCTCCGAGAAATACGT-CTCGAGTACGGGACCGATTGCTTAGEST: gi|211099201|gb|FL356881.1|FL356881
genomic: GGCTATTGGCGCCAAGTTCATACCTTTGCGCAAGCCTAGGAAGCTCCCCGgtgagactcc ... aacatggaagGCGAGGTGATCTCCGAGAAATACGTTCTCGAGTACGGGACCGATTGCTTAG
EST: GGCTATTGGCGCCAAGTTCATACCTTTGCGCAAGCCTAGGAAGCTCCCCG GCGAGGTGATCTCCGAGEST: gi|211282866|gb|FL309978.1|FL309978
genomic: GGCTATTGGCGCCAAGTTCATACCTTTGCGCAAGCCTAGGAAGCTCCCCGgtgagactcc ... aacatggaagGCGAGGTGATCTCCGAG
EST: GGCTATTGGCGCCAAGTTCATACCTTTGCGCAAGCCTAGGAAGCTCCCCG GCGAGGTGATCTCCGAGAEST: gi|28931324|gb|CB334685.1|CB334685
genomic: GGCTATTGGCGCCAAGTTCATACCTTTGCGCAAGCCTAGGAAGCTCCCCGgtgagactcc ... aacatggaagGCGAGGTGATCTCCGAGA
EST: GGCTATTGGCGCCAAGTTCATACCTTTGCGCAAGCCTAGGAAGCTCCCCG GCGAGGTGATCTCCGAGAAATACGTTCTCGAGTACGGGACCGATTGCTTAG
genomic: GGCTATTGGCGCCAAGTTCATACCTTTGCGCAAGCCTAGGAAGCTCCCCGgtgagactcc ... aacatggaagGCGAGGTGATCTCCGAGAAATACGTTCTCGAGTACGGGACCGATTGCTTAG
ttcccccaagagattctgtgcatgtgctaacatccttctcttgaaaacatggaagGCGAGGTGATCTCCGAGAAATACGTTCTCGAGTACGGGACCGATTGCTTAGAGATGCATGTCGGAGCCATCGAACGACCTGGTGAGCGCGTGCTGATCAC
tgctaac putative branch site (score: 11)
ttgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agactgttacgcgagatcattgtgcactcttgtccagttgttctattcccccaagagattctgtgcatgtgctaacatccttctcttgaaaacatggaagGCGAGGTGATCTCCGAGAAATACGTTCTCGAGTACGGGACCGATTGCTTAGAGATGCATGTCGGAGCCATCGAACGACCTGGTGAGCGCGTGCTGATCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -ctgttac
- - - - - - - - - - - tgcactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt