1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagctctttaattgcctagtttataccctttgcaaacccttctgctggcataatgatatagcattctgctttcctgtagAGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCG
species | Zea mays |
transcript | GRMZM2G071675_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATAAACATGAACTACATGGTTCTTTCGGCACTACATCACTATGCACATA AGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATEST: gi|4887313|gb|AI677412.1|AI677412
genomic: GATAAACATGAACTACATGGTTCTTTCGGCACTACATCACTATGCACATAgtaagctctt ... tttcctgtagAGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGAT
EST: GATAACCATGAACTACATGGTTCTTTCGGCACTACATCACTATGCACATA AGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATEST: gi|7844296|gb|AW787518.1|AW787518
genomic: GATAAACATGAACTACATGGTTCTTTCGGCACTACATCACTATGCACATAgtaagctctt ... tttcctgtagAGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGAT
EST: GATAAACATGAACTACATGGTTCTTTCGGCACTACATCACTATGCACATA AGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATEST: gi|89247235|gb|DY619021.1|DY619021
genomic: GATAAACATGAACTACATGGTTCTTTCGGCACTACATCACTATGCACATAgtaagctctt ... tttcctgtagAGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGAT
EST: GGCACTACATCACTATGCACATA AGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATEST: gi|87152875|gb|DY397664.1|DY397664
genomic: GGCACTACATCACTATGCACATAgtaagctctt ... tttcctgtagAGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGAT
EST: GATAAACATGAACTACATGGTTCTTTCGGCACTACATCACTATGCACATA AGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGAT
genomic: GATAAACATGAACTACATGGTTCTTTCGGCACTACATCACTATGCACATAgtaagctctt ... tttcctgtagAGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGAT
accctttgcaaacccttctgctggcataatgatatagcattctgctttcctgtagAGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCG
cattctgctttcct CT-rich tract
ataatgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctctttaattgcctagtttataccctttgcaaacccttctgctggcataatgatatagcattctgctttcctgtagAGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA