1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cctttttaatcccaatgtcatgcatagtctatgctcaatcttacatcaatgtcccgttggctacttcactccttgcgaataacaaactctgttcctgcagATCGGCTAACATTGGAGTATTCATTTGCCTAAAGTGTTCTGGTGTTCACAGAAGCCTCGGGACACATGTTTCAAAG
species | Zea mays |
transcript | GRMZM2G071582_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCGGCAACCGCGTATGTGCCGACTGCGGCGCACCTGATCCCAAATGGGC ATCGGCTAACATTGGAGTATTCATTTGCCTAAAGTGTTCTGGTGTTCACAGEST: gi|94479374|gb|EB708332.1|EB708332
genomic: AGCGGCAACCGCGTATGTGCCGACTGCGGCGCACCTGATCCCAAATGGGCgtaagagtac ... gttcctgcagATCGGCTAACATTGGAGTATTCATTTGCCTAAAGTGTTCTGGTGTTCACAG
EST: AGCGGCAACCGCGTATGTGCCGACTGCGGCGCACCTGATCCCAAATGGCC ATCGGCTAACATTGGAGTATTTCATTTGCCTAAAGTGTTCEST: gi|71319987|gb|DR796756.1|DR796756
genomic: AGCGGCAACCGCGTATGTGCCGACTGCGGCGCACCTGATCCCAAATGGGCgtaagagtac ... gttcctgcagATCGGCTAACATTGGAGTATT-CATTTGCCTAAAGTGTTC
EST: AGCGGCAACCGCGTATGTGCCGACTGCGGCGCACCTGATCCCAAATGGGC ATCGGCTAACATTGGAGTATTCATTTGCCTAAAGTGTTCTGGTGTTCACAGEST: gi|76920508|gb|DV168207.1|DV168207
genomic: AGCGGCAACCGCGTATGTGCCGACTGCGGCGCACCTGATCCCAAATGGGCgtaagagtac ... gttcctgcagATCGGCTAACATTGGAGTATTCATTTGCCTAAAGTGTTCTGGTGTTCACAG
EST: AGCGGCAACCGCGTATGTGCCGACTGCGGCGCACCTGATCCCAAATGGGC ATCGGCTAACATTGGAGTATTCATTTGCCTAAAGTGTTCTGGTGTTCACAG
genomic: AGCGGCAACCGCGTATGTGCCGACTGCGGCGCACCTGATCCCAAATGGGCgtaagagtac ... gttcctgcagATCGGCTAACATTGGAGTATTCATTTGCCTAAAGTGTTCTGGTGTTCACAG
tcaatgtcccgttggctacttcactccttgcgaataacaaactctgttcctgcagATCGGCTAACATTGGAGTATTCATTTGCCTAAAGTGTTCTGGTGTTCACAGAAGCCTCGGGACACATGTTTCAAAG
gaataac putative branch site (score: 18)
ctctgttcct putative PPT
aataacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctttttaatcccaatgtcatgcatagtctatgctcaatcttacatcaatgtcccgttggctacttcactccttgcgaataacaaactctgttcctgcagATCGGCTAACATTGGAGTATTCATTTGCCTAAAGTGTTCTGGTGTTCACAGAAGCCTCGGGACACATGTTTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC