1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaacagatgagctatatatatgcttgcacaaaccagtgtttggatagaaattattgacgacgtttctacgtttgctctttgtgcagGATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGCAAGGCTCCTCTT
species | Zea mays |
transcript | GRMZM2G071174_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAG GATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGCEST: gi|7216515|gb|AW562637.1|AW562637
genomic: TCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAGgtgaacagat ... ctttgtgcagGATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGC
EST: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAG GATAAGTTCCACTCCTTCCATCCTGTCGCCACTATTCTGAGCTACCTCAGCEST: gi|76292807|gb|DV032375.1|DV032375
genomic: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAGgtgaacagat ... ctttgtgcagGATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGC
EST: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAG GATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGCEST: gi|32871160|gb|CF010842.1|CF010842
genomic: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAGgtgaacagat ... ctttgtgcagGATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGC
EST: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAG GATAAGTTCCACTCCTTCCATCCTGTCGCCACTATTCTGAGCTACCTCAGCEST: gi|149088064|gb|EE287263.2|EE287263
genomic: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAGgtgaacagat ... ctttgtgcagGATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGC
EST: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAG GATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGCEST: gi|211349609|gb|FL219983.1|FL219983
genomic: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAGgtgaacagat ... ctttgtgcagGATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGC
EST: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAG GATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGCEST: gi|76292806|gb|DV032374.1|DV032374
genomic: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAGgtgaacagat ... ctttgtgcagGATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGC
EST: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAG GATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTTTGAGCTACCTCAGCEST: gi|78082400|gb|DV510812.1|DV510812
genomic: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAGgtgaacagat ... ctttgtgcagGATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGC
EST: TCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAG GATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGCEST: gi|211149656|gb|FL454002.1|FL454002
genomic: TCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAGgtgaacagat ... ctttgtgcagGATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGC
EST: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAG GATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGC
genomic: TGCTCCTAGCTGAGCTCAGCACTCGGATTCAGCTCAAGGCCGAAGGGCAGgtgaacagat ... ctttgtgcagGATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGC
accagtgtttggatagaaattattgacgacgtttctacgtttgctctttgtgcagGATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGCAAGGCTCCTCTT
tattgac putative branch site (score: 454)
tttgctcttt putative PPT
atagaaattattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaacagatgagctatatatatgcttgcacaaaccagtgtttggatagaaattattgacgacgtttctacgtttgctctttgtgcagGATAAGTTCCACTCCTTCCACCCTGTCGCCACTATTCTGAGCTACCTCAGCAAGGCTCCTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC