1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaggatctggtcgcaggctccaagtgcgaccatctagatgctgtagctgctgcatttcctcgttattgacgcatggtgcttgcgatgtgatgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCCGCCCCATCCTGCACCACTACGACGGGCCCAAGTTCCGGCTCGAGCTCT
species | Zea mays |
transcript | GRMZM2G071154_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|149002886|gb|EE038882.2|EE038882
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATTTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|18178271|gb|BM379481.1|BM379481
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|7844641|gb|AW787863.1|AW787863
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|50336543|gb|CO531669.1|CO531669
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|149082668|gb|EE171878.2|EE171878
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATTTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|60338891|gb|DN205864.1|DN205864
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|93015747|gb|EB641267.1|EB641267
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|149000689|gb|EE037900.2|EE037900
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|78108222|gb|DV526640.1|DV526640
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: GACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|91871816|gb|EB401773.1|EB401773
genomic: GACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: GAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|211386348|gb|FL456698.1|FL456698
genomic: GAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGAGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|9953961|gb|BE640544.1|BE640544
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGTGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|110517513|gb|EE022100.1|EE022100
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATTTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|211074694|gb|FL076199.1|FL076199
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGAGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|78022808|gb|DV491195.1|DV491195
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|149088944|gb|EE178087.2|EE178087
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATTTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|4730256|gb|AI649422.1|AI649422
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|149090354|gb|EE179660.2|EE179660
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATTTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|71444740|gb|DR825790.1|DR825790
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|211171601|gb|FL423137.1|FL423137
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCEST: gi|9794605|gb|BE552913.1|BE552913
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
EST: CGGCGTGGGAGGACAAGAAGTG-CCCGGCGAGTCGCGCTTTCCTGCGCAG GTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctact ... tgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTC
gctgctgcatttcctcgttattgacgcatggtgcttgcgatgtgatgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCCGCCCCATCCTGCACCACTACGACGGGCCCAAGTTCCGGCTCGAGCTCT
tattgac putative branch site (score: 2)
ttattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggatctggtcgcaggctccaagtgcgaccatctagatgctgtagctgctgcatttcctcgttattgacgcatggtgcttgcgatgtgatgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCCGCCCCATCCTGCACCACTACGACGGGCCCAAGTTCCGGCTCGAGCTCT
- - - - - - gcaggct
- - - - - - - - - - caagtgc
- - - - - - - - - - - - - - - - - - gatgctg
- - - - - - - - - - - - - - - - - - - - - - -gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgc