Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatagggccaaatatgctatgtgccatatcagtactttctgcatgctgcttcccattattgtcaaacatcaattagacagtttgtttgatcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAAGATCACCATCATGTGGAATCAGTACTGCATTCAGCAAAGCACGAGTATG

Basic information

species Zea mays
transcript GRMZM2G070360_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 3'ss of exon 3
-caatagggccaaatatgctatgtgccatatcagtactttctgcatgctgcttcccattattgtcaaa-catcaattagacagtttgtttgatcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAAGATCACCATCATGTGGAATCAGTACTGCATTCAGCAAAGCACGAGTATG
 ||||       |      || ||   | ||     ||   ||  || |   | |  |||||  ||||  |   |||   ||  |||  ||   |||| ||||| ||||| || |||||||||||||| ||| | |||||||||||||| ||||| || |||||||||||||| |||||||||||||||||| | || ||||
tcaatttaattgatggaattaagtttgaaatgccatctccttgtttgttcactactgttattaacaaaataatcattcatcatattgactgg--aaatacagGGTTTGCTTCGGTTGAAAGAGCCAGCGGTACTTCTCCGTTGCCGCAAAGAAGACCATCATCATGTGGAATCTGTACTGCATTCAGCAAAGAATGAATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60343804|gb|DN210777.1|DN210777
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|60398792|gb|DN231608.1|DN231608
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|211298626|gb|FL380968.1|FL380968
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|9254375|gb|BE344843.1|BE344843
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|93017021|gb|EB642541.1|EB642541
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|71440306|gb|DR821356.1|DR821356
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|91056063|gb|EB166481.1|EB166481
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|5895940|gb|AW037186.1|AW037186
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|76291539|gb|DV031107.1|DV031107
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAACTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|61118336|gb|DN559297.1|DN559297
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|6102086|gb|AW126556.1|AW126556
EST:     GCCACAACCCCCATGAATACAAGAACCTTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|5917377|gb|AW054168.1|AW054168
EST:     TTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAAAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: TTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|60338784|gb|DN205757.1|DN205757
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|5871032|gb|AW017608.1|AW017608
EST:     TTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: TTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|148979069|gb|EE026482.2|EE026482
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCCAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|78021201|gb|DV489588.1|DV489588
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|5871144|gb|AW017585.1|AW017585
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|6020701|gb|AW065509.1|AW065509
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|78021681|gb|DV490068.1|DV490068
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|60353247|gb|DN220220.1|DN220220
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|85153049|gb|DW587948.1|DW587948
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGGA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGG-A
EST: gi|78022447|gb|DV490834.1|DV490834
EST:     CAAGAACC-TTTGAAAGGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCTGTTGCCGCAAGGAA
genomic: CAAGAACCTTTTGAAA-GATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|22936000|gb|BU572275.1|BU572275
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|211317007|gb|FL374745.1|FL374745
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|6194518|gb|AW146622.1|AW146622
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|93017439|gb|EB642959.1|EB642959
EST:     GCCACAACCACCATGAATACAAGACCCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGC
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGC
EST: gi|4967015|gb|AI691793.1|AI691793
EST:     TTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: TTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|6227120|gb|AW155649.1|AW155649
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTATT-AG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|211332900|gb|FL428098.1|FL428098
EST:     CCGCAACCACCATGAATACAAGAACCTCTTTGATAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCACCTGTTTTGGTCCGTTGCC
genomic: CCACAACCACCATGAATACAAGAACCT-TTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCC
EST: gi|116817248|gb|EC860065.1|EC860065
EST:     GGGACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|5455944|gb|AI833634.1|AI833634
EST:     CAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: CAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|211014107|gb|FL390333.1|FL390333
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|74235297|gb|DT643211.1|DT643211
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|60353442|gb|DN220415.1|DN220415
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|9254374|gb|BE344842.1|BE344842
EST:     CTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: CTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|71331382|gb|DR802528.1|DR802528
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|149095115|gb|EE180726.2|EE180726
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|5871489|gb|AW017960.1|AW017960
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|211315184|gb|FL384858.1|FL384858
EST:     CCACAACCACCATTGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGT
genomic: CCACAACCACCAT-GAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGT
EST: gi|60354680|gb|DN221653.1|DN221653
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|6194534|gb|AW146638.1|AW146638
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|71440305|gb|DR821355.1|DR821355
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|94478080|gb|EB707038.1|EB707038
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|60358982|gb|DN225955.1|DN225955
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|148933452|gb|EC877146.2|EC877146
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|6828162|gb|AW331805.1|AW331805
EST:     CTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: CTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|211048985|gb|FL423000.1|FL423000
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAGAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|6020714|gb|AW065522.1|AW065522
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAG
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAG
EST: gi|60355195|gb|DN222168.1|DN222168
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|5343244|gb|AI795549.1|AI795549
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|211172984|gb|FL396044.1|FL396044
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|5439481|gb|AI820402.1|AI820402
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|67017910|gb|CO446659.1|CO446659
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|5847170|gb|AW000249.1|AW000249
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTATTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|149077234|gb|EE165904.2|EE165904
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|60349876|gb|DN216849.1|DN216849
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
EST: gi|91873822|gb|EB403779.1|EB403779
EST:     GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAG                         GGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA
genomic: GCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 246

TCTAGTAAACAAAATGAAAGACGATGCGATGAAGGAACTCCTCCTTGTCAGCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAAGATCACCATCATGTGGAATCAGTACTGCATTCAGCAAAGCACGAGTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 427

TCTAGTAAACAAAATGAAAGACGATGCGATGAAGGAACTCCTCCTTGTCAGCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAAGATCACCATCATGTGGAATCAGTACTGCATTCAGCAAAGCACGAGTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 287

TCTAGTAAACAAAATGAAAGACGATGCGATGAAGGAACTCCTCCTTGTCAGCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAAGATCACCATCATGTGGAATCAGTACTGCATTCAGCAAAGCACGAGTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 335

TCTAGTAAACAAAATGAAAGACGATGCGATGAAGGAACTCCTCCTTGTCAGCCACAACCACCATGAATACAAGAACCTTTTGAAAGATCTAATTGTTCAGgttaggacaa ... tcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAAGATCACCATCATGTGGAATCAGTACTGCATTCAGCAAAGCACGAGTATG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgcttcccattattgtcaaacatcaattagacagtttgtttgatcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAAGATCACCATCATGTGGAATCAGTACTGCATTCAGCAAAGCACGAGTATG
                                       gtttgat  putative branch site (score: 335)
          attattgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caatagggccaaatatgctatgtgccatatcagtactttctgcatgctgcttcccattattgtcaaacatcaattagacagtttgtttgatcaaattcagGGCTTGCTCCGTTTGAAAGAGCCAGCTGTATTGCTCCGTTGCCGCAAGGAAGATCACCATCATGTGGAATCAGTACTGCATTCAGCAAAGCACGAGTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - tatgtgc
- - - - - - - - - - - - - - - - - - - -ctgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtttg