1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgacgacgtactactggcctgcgtcctcctcattattatccctattaatcagtacgcatttatacatacataacgtaaattctatggactaaaaaagagttacaagtaacttttaatctgaaacggagctaggaagtttgtaatgtcgtcgtcctctggcaataacttggccgtcgctaacgtacgtacgcgtgcagGCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTGGAAGCAACAAG
species | Zea mays |
transcript | GRMZM2G070252_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCG GCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTGEST: gi|149099789|gb|EE185842.2|EE185842
genomic: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCGgtacgacgac ... acgcgtgcagGCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTG
EST: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCG GCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTGEST: gi|149101143|gb|EE187251.2|EE187251
genomic: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCGgtacgacgac ... acgcgtgcagGCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTG
EST: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCG GCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTGEST: gi|148928766|gb|EC873522.2|EC873522
genomic: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCGgtacgacgac ... acgcgtgcagGCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTG
EST: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCG GCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTGEST: gi|148961396|gb|EE012134.2|EE012134
genomic: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCGgtacgacgac ... acgcgtgcagGCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTG
EST: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCG GCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTGEST: gi|8367234|gb|BE050179.1|BE050179
genomic: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCGgtacgacgac ... acgcgtgcagGCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTG
EST: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCG GCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTGEST: gi|149089894|gb|EE179180.2|EE179180
genomic: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCGgtacgacgac ... acgcgtgcagGCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTG
EST: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCG GCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTGEST: gi|67020546|gb|CO449295.1|CO449295
genomic: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCGgtacgacgac ... acgcgtgcagGCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTG
EST: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCG GCCTTGACCGCGGACACCGGCAGCAAAAGAAAGCTCAGGAACATGGTCTTGEST: gi|149077280|gb|EE165954.2|EE165954
genomic: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCGgtacgacgac ... acgcgtgcagGCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTG
EST: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCG GCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTG
genomic: TCGGATATTTTGCGTTCCACTGGGACCATGCCACCTACCTCATCACCTCGgtacgacgac ... acgcgtgcagGCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTG
atgtcgtcgtcctctggcaataacttggccgtcgctaacgtacgtacgcgtgcagGCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTGGAAGCAACAAG
cgctaac putative branch site (score: 87)
aataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgacgacgtactactggcctgcgtcctcctcattattatccctattaatcagtacgcatttatacatacataacgtaaattctatggactaaaaaagagttacaagtaacttttaatctgaaacggagctaggaagtttgtaatgtcgtcgtcctctggcaataacttggccgtcgctaacgtacgtacgcgtgcagGCCTTGACCGCGGACACCGGCAGCAAAAGGAAGCTCAGGAACATGGTCTTGGAAGCAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA