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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttatttcttaattccagcacttgactgagtagattgactataggtattgcttacttgtgcttgtttcgaggctcagACTCTTCTGCAGATGGAAGACATACATGCTTCCGTGAGTGCGCTGCAATATTACACTTCCGTTCAACCTAGCATAAG

Basic information

species Zea mays
transcript GRMZM2G070113_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211448116|gb|FL293418.1|FL293418
EST:     GCCGGTTCGGCGTGGTCTCCAAGATCGTCATGTTGCGTGCCAAGAACCAA                         ACTCTTCTGCAGATGGAAGACATACATGCTTCCGTGAGTGCGCTGCAATAT
genomic: GCCG-TTCGGCGTGGTCTCCAAGATCGTCATGTTGCGTGCCAAGAACCAAgtgggttatt ... cgaggctcagACTCTTCTGCAGATGGAAGACATACATGCTTCCGTGAGTGCGCTGCAATAT
EST: gi|31360867|gb|CD445224.1|CD445224
EST:     AGCCGTTCGGCGTGGTCTCCAAGATCGTCATGTTGCGTGCCAAGAACCAA                         GCTCTTCTGCAGATGGAAGACATACATGCTTCCGTGAGTGCGCTGCAATAT
genomic: AGCCGTTCGGCGTGGTCTCCAAGATCGTCATGTTGCGTGCCAAGAACCAAgtgggttatt ... cgaggctcagACTCTTCTGCAGATGGAAGACATACATGCTTCCGTGAGTGCGCTGCAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgactgagtagattgactataggtattgcttacttgtgcttgtttcgaggctcagACTCTTCTGCAGATGGAAGACATACATGCTTCCGTGAGTGCGCTGCAATATTACACTTCCGTTCAACCTAGCATAAG
                          tgcttac  putative branch site (score: 2)
                                      cttgtttc  putative PPT