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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacaacaaaaaaattggtaatacttcataaattgtcacataaatttatgggtaacaactgatacattaatttattgaggtttctctatcatacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGGGAACCCCTATATGTGAAATTTCGGCTTCGTGAACCTTTTCACAAGCCGA

Basic information

species Zea mays
transcript GRMZM2G069970_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5928871|gb|AW056163.1|AW056163
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAG                         GTTTGTAGATCAATCGGNGATGCTTATCTCAAGAAACAAGAGTTCAATAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAGgtgtgtattc ... tacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
EST: gi|211408450|gb|FL066151.1|FL066151
EST:     AAAGGACTAATTCAG                         GTTTGTAGATCAATCGGTGATGCTTATCTCAMGAMGCAAGAGTTCAATAGG
genomic: AAAGGACTAATTCAGgtgtgtattc ... tacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
EST: gi|28422416|gb|CB251896.1|CB251896
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAG                         GTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAGgtgtgtattc ... tacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
EST: gi|93283060|gb|EB675324.1|EB675324
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAG                         GTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAGgtgtgtattc ... tacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
EST: gi|78073908|gb|DV502342.1|DV502342
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAG                         GTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAGgtgtgtattc ... tacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG
EST: gi|5268629|gb|AI770593.1|AI770593
EST:     ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAG                         GTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAACAAGAGTTCAATAGG
genomic: ACATTGTTGTTCTCAAGCACAATGTTTGGCGTGTAAAAGGACTAATTCAGgtgtgtattc ... tacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgggtaacaactgatacattaatttattgaggtttctctatcatacattgcagGTTTGTAGATCAATCGGTGATGCTTATCTCAAGAAGCAAGAGTTCAATAGGGAACCCCTATATGTGAAATTTCGGCTTCGTGAACCTTTTCACAAGCCGA
                  cattaat  putative branch site (score: 3)
             tgatacattaatttat  TA-rich tract