1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aacatcgattgtactatcggttattacatcaatctcatgtatgtattgactctcttgagccgctacagtgttttattatgttttggttatttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTGCACACCCTGCTGCCAAG
species | Zea mays |
transcript | GRMZM2G069765_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG GTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTGEST: gi|6021027|gb|AW065955.1|AW065955
genomic: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAGgtatgcctaa ... ttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTG
EST: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG GTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTGEST: gi|211229393|gb|FL136781.1|FL136781
genomic: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAGgtatgcctaa ... ttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTG
EST: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG GGGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATEST: gi|78083040|gb|DV511433.1|DV511433
genomic: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAGgtatgcctaa ... ttttcttcagG--TATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACAT
EST: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG GTATTGTGGTTACTAATGATGGAAATGCCATTTTGAGGGAAATAGACATTGEST: gi|211231449|gb|FL136785.1|FL136785
genomic: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAGgtatgcctaa ... ttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTG
EST: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG GTATTGTGNTTACTAATGATGGTAATGGCATTTTGAGGGAAATAGACATTGEST: gi|211231451|gb|FL136787.1|FL136787
genomic: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAGgtatgcctaa ... ttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTG
EST: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG GTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTGEST: gi|211231448|gb|FL136784.1|FL136784
genomic: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAGgtatgcctaa ... ttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTG
EST: ACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGNAG GTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTEST: gi|211229392|gb|FL136780.1|FL136780
genomic: ACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGG-AGgtatgcctaa ... ttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATT
EST: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG GTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTGEST: gi|32865501|gb|CF005183.1|CF005183
genomic: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAGgtatgcctaa ... ttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTG
EST: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG GTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTGEST: gi|211229391|gb|FL136779.1|FL136779
genomic: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAGgtatgcctaa ... ttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTG
EST: ACATTGGGGTCC-AGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG GTATTGTGGGTACTAATGATGGTAATGCCATTTTGAGGGAA-TAGACATTGEST: gi|149082543|gb|EE171738.2|EE171738
genomic: ACATTGGG-TCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAGgtatgcctaa ... ttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTG
EST: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAG GTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTG
genomic: TACATTGGGTCCCAGATCCATGCTGAAAATGCTTCTGGATGCTAGTGGAGgtatgcctaa ... ttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTG
ttgactctcttgagccgctacagtgttttattatgttttggttatttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTGCACACCCTGCTGCCAAG
tattgac putative branch site (score: 2)
ttatttttcttc putative PPT
ttttattatgttttgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacatcgattgtactatcggttattacatcaatctcatgtatgtattgactctcttgagccgctacagtgttttattatgttttggttatttttcttcagGTATTGTGGTTACTAATGATGGTAATGCCATTTTGAGGGAAATAGACATTGCACACCCTGCTGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC