1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttattatctaagcagaaatgttttctttgtttgggggattttaaattgttatatgagtttctgtgatgaaacatcaagctgattatgttcttatcaatagGTTGTTGCTGAGATGAATCATCAGTTTGCAGCTGGCATTCAG
species | Zea mays |
transcript | GRMZM2G069408_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
ttgttatatgagtttctgtgatgaaacatcaagctgattatgttcttatcaatagGTTGTTGCTGAGATGAATCATCAGTTTGCAGCTGGCATTCAG
agctgat putative branch site (score: 13)
ttcttatc putative PPT
ttatcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattatctaagcagaaatgttttctttgtttgggggattttaaattgttatatgagtttctgtgatgaaacatcaagctgattatgttcttatcaatagGTTGTTGCTGAGATGAATCATCAGTTTGCAGCTGGCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - agcagaa
- - - - - - - - - - - - - ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatt