1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagattaacggattcacttttcttcgattctcattgagtatttcccttccatctattgtgtattcttcacaaattttttggtgtgtcttgcagTTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAG
species | Zea mays |
transcript | GRMZM2G069198_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATAGGGCCTGGATTTCTCGTCTCAATTGCATAT-T-GATCCTGGAAACT TTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAGEST: gi|211049303|gb|FL092984.1|FL092984
genomic: CATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACTgtaagattaa ... tgtcttgcagTTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAG
EST: CATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACT TTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAGEST: gi|211420191|gb|FL124229.1|FL124229
genomic: CATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACTgtaagattaa ... tgtcttgcagTTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAG
EST: CATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACT TTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAGEST: gi|211420190|gb|FL124228.1|FL124228
genomic: CATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACTgtaagattaa ... tgtcttgcagTTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAG
EST: CATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACT TTGAGACGGATCTACAGGCTGGAGEST: gi|88757771|gb|DY541912.1|DY541912
genomic: CATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACTgtaagattaa ... tgtcttgcagTTGAGACGGATCTACAGGCTGGAG
EST: CATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACT TTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAGEST: gi|93014188|gb|EB639708.1|EB639708
genomic: CATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACTgtaagattaa ... tgtcttgcagTTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAG
EST: CATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACT TTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAG
genomic: CATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACTgtaagattaa ... tgtcttgcagTTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAG
tatttcccttccatctattgtgtattcttcacaaattttttggtgtgtcttgcagTTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAG
ttcacaaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattaacggattcacttttcttcgattctcattgagtatttcccttccatctattgtgtattcttcacaaattttttggtgtgtcttgcagTTGAGACGGATCTACAGGCTGGAGCACAGTACAAATATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA