1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaataaaccaattctaaagctatttctgattgatattttaggtccaaatgtattatattttgttgtcatgtggtggaaactctggttacgaatgttcttgttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATCATCCCAGGGAGGGTGGTTTTGTACCTGTCACATTGAACAGCGGTGGAT
species | Zea mays |
transcript | GRMZM2G069009_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|78082860|gb|DV511253.1|DV511253
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGGACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|78082473|gb|DV510885.1|DV510885
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|76286604|gb|DV026172.1|DV026172
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|149102933|gb|EE288285.2|EE288285
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGAT
EST: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAG TACTATGCAAAGAAT
genomic: CCGCAGTTACAGTGGAGTACCCAGAGCGTCCTGGACAGCCTCTCTGTGAGgtaaataaac ... ttattttcagTACTATGCAAAGAAT
tattttgttgtcatgtggtggaaactctggttacgaatgttcttgttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATCATCCCAGGGAGGGTGGTTTTGTACCTGTCACATTGAACAGCGGTGGAT
ttcttgttattttc CT-rich tract
ttgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataaaccaattctaaagctatttctgattgatattttaggtccaaatgtattatattttgttgtcatgtggtggaaactctggttacgaatgttcttgttattttcagTACTATGCAAAGAATGGCACCTGTAAATTTGGTTCCAATTGCAAGTTTGATCATCCCAGGGAGGGTGGTTTTGTACCTGTCACATTGAACAGCGGTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA