1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtcgctgcacattcaggtcatacctatggtatcttgattgcagtttttgttgcacatatatttacctagtttatggccaccaatgcctggctaaatcctctcccgaaaatagaggttctgaatcctgaatttgctaggtaggtagAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAGTGCAGAGCATGTTGACAATGGCTTCCTGCACAGGTCAGAGGTAACCCGAGAGGAGCA
species | Zea mays |
transcript | GRMZM2G068392_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGAGGGCAGTACGCTGCTTTTCAA-GATGAGTTCCTTACCAACCCT GEST: gi|78076514|gb|DV504948.1|DV504948
genomic: GAAGAGAGGGCAGTACGCTGCTTT-CAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: GAAGAGAGGGCAGTACGCTGCTTTTCAA-GATGAGTTCCTTACCAACCCT GEST: gi|78076514|gb|DV504948.1|DV504948
genomic: GAAGAGAGGGCAGTACGCTGCTTT-CAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: GAAGAGAGGGCAGTACGCTGCTTTTCAA-GATGAGTTCCTTACCAACCCT GEST: gi|211170254|gb|FL097983.1|FL097983
genomic: GAAGAGAGGGCAGTACGCTGCTTT-CAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|211170254|gb|FL097983.1|FL097983
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|211170254|gb|FL097983.1|FL097983
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|44681890|gb|CK786938.1|CK786938
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|44681890|gb|CK786938.1|CK786938
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|44681890|gb|CK786938.1|CK786938
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|50324142|gb|CO519268.1|CO519268
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTGTEST: gi|50324142|gb|CO519268.1|CO519268
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC--Tgtaagtcgct ... aggtaggta
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTGTEST: gi|50324142|gb|CO519268.1|CO519268
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC--Tgtaagtcgct ... aggtaggta
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTGTEST: gi|50331308|gb|CO526434.1|CO526434
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC--Tgtaagtcgct ... aggtaggta
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTGTEST: gi|50331308|gb|CO526434.1|CO526434
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC--Tgtaagtcgct ... aggtaggta
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTGTEST: gi|50331308|gb|CO526434.1|CO526434
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC--Tgtaagtcgct ... aggtaggta
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTGTEST: gi|71433967|gb|DR815017.1|DR815017
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC--Tgtaagtcgct ... aggtaggta
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTGTEST: gi|71433967|gb|DR815017.1|DR815017
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC--Tgtaagtcgct ... aggtaggta
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTGTEST: gi|71433967|gb|DR815017.1|DR815017
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC--Tgtaagtcgct ... aggtaggta
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTGTEST: gi|211166904|gb|FL097963.1|FL097963
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC--Tgtaagtcgct ... aggtaggta
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|211166904|gb|FL097963.1|FL097963
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|211166904|gb|FL097963.1|FL097963
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|148935027|gb|EC879068.2|EC879068
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTGTAGGTEST: gi|148935027|gb|EC879068.2|EC879068
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC------Tgtaagtcgct ... aggta
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTGTAGGTEST: gi|148935027|gb|EC879068.2|EC879068
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC------Tgtaagtcgct ... aggta
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTGTAGGTEST: gi|50331565|gb|CO526691.1|CO526691
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCC------Tgtaagtcgct ... aggta
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|50331565|gb|CO526691.1|CO526691
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|50331565|gb|CO526691.1|CO526691
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|38502614|gb|CF972474.1|CF972474
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|38502614|gb|CF972474.1|CF972474
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT GEST: gi|38502614|gb|CF972474.1|CF972474
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
EST: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCT G
genomic: AGAAGAGAGGGCAGTACGCTGCTTTCAAAGATGAGTTCCTTACAAACCCTgtaagtcgct ... aggtaggtag-
ctaaatcctctcccgaaaatagaggttctgaatcctgaatttgctaggtaggtagAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAGTGCAGAGCATGTTGACAATGGCTTCCTGCACAGGTCAGAGGTAACCCGAGAGGAGCA
ggctaaa putative branch site (score: 3)
aaaataga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcgctgcacattcaggtcatacctatggtatcttgattgcagtttttgttgcacatatatttacctagtttatggccaccaatgcctggctaaatcctctcccgaaaatagaggttctgaatcctgaatttgctaggtaggtagAAAGAGCGCAACAGGTGCCAACAGAAGGCCACCACAACGTAAGTGCAGAGCATGTTGACAATGGCTTCCTGCACAGGTCAGAGGTAACCCGAGAGGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA