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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttatcactgaaaataaatttaagttctttttttcatccttttatgtactaatggtgttcttcatttctacagCTCCAGAACATAAAATCTGAAATAGCTGATGTGTCTGCTAATCCTCAAGGTCTACTTTTAGAGGCCCTTCATTCGGTTGGATATTCTGGGGCACTGGCAA

Basic information

species Zea mays
transcript GRMZM2G068336_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068336_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g44916.1 (Oryza sativa), 3'ss of exon 3
gtactttatcact--gaaaataaatttaagttctttttttcatccttttatgtactaatggt-gttcttcatttctacagCTCCAGAACATAAAATCTGAAATAGCTGATGTGTCTGCTAATCCTCAAGGTCTACTTTTAGAGGCCCTTCATTCGGTTGGATATTCTGGGGCACTGGCAA
|| | | |||| |  ||  || |  ||  | |  ||||       |||||   | || |  | | |  |   |||||||||||||||| ||||||||||||||| |||| ||||||| | |||| || ||||||||| | || || || ||||||| ||||||||||||||| |||||||
gtgcatgatcattttgagcattatatttcgctaattttgcttcttttttactgattattatttgctaattgcttctacagCTCCAGAAGATAAAATCTGAAATATCTGAAGTGTCTGGTGATCCACATGGTCTACTTATGGAAGCGCTCCATTCGGCTGGATATTCTGGGGCTCTGGCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaagttctttttttcatccttttatgtactaatggtgttcttcatttctacagCTCCAGAACATAAAATCTGAAATAGCTGATGTGTCTGCTAATCCTCAAGGTCTACTTTTAGAGGCCCTTCATTCGGTTGGATATTCTGGGGCACTGGCAA
                            tactaat  putative branch site (score: 1)
                                     tgttcttcatttct  putative PPT
                     ttttatgtactaat  TA-rich tract