Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggtctcgatgaactcagacaccaccgctcaatgcagagtgctttagaatccacaccgacacatattacatactctaacctggtgtaaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA

Basic information

species Zea mays
transcript GRMZM2G068193_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38229860|gb|CF920173.1|CF920173
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTNCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|74241826|gb|DT649740.1|DT649740
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|166641845|gb|EG306189.1|EG306189
EST:     GGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCC-TGGCGACTCGGAGCTGCAGC
genomic: GGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|28909866|gb|CB331138.1|CB331138
EST:     CACGCACTACTCCACCCCGGNTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGAC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGAC
EST: gi|12972075|gb|BG267801.1|BG267801
EST:     GTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: GTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|78105695|gb|DV524113.1|DV524113
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|91873817|gb|EB403774.1|EB403774
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|94472111|gb|EB701069.1|EB701069
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCT
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCT
EST: gi|50336340|gb|CO531466.1|CO531466
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|18383612|gb|BM416812.1|BM416812
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|76018820|gb|DT945990.1|DT945990
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|86471384|gb|DY237754.1|DY237754
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|76018821|gb|DT945991.1|DT945991
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|60340813|gb|DN207786.1|DN207786
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|71329066|gb|DR801242.1|DR801242
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|60351484|gb|DN218457.1|DN218457
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|211319984|gb|FK976018.1|FK976018
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCANGTCASTTTTCCCTGGCGACTCGGAGCTGCAG
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCA-GCCACTTTTCCCTGGCGACTCGGAGCTGCAG
EST: gi|50330881|gb|CO526007.1|CO526007
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGC
EST: gi|101392380|gb|EB818119.1|EB818119
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAG
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAG
EST: gi|89247623|gb|DY619409.1|DY619409
EST:     CACGCCCTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|71430257|gb|DR811307.1|DR811307
EST:     ACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTTCG                         C-GAGCTGGTCACTAACCAGCCCACTTTTCCCTGGCGACTCGGAGCTGCA
genomic: ACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTT-CGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCC-ACTTTTCCCTGGCGACTCGGAGCTGCA
EST: gi|211247009|gb|FL481691.1|FL481691
EST:     CGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|78105696|gb|DV524114.1|DV524114
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|71434993|gb|DR816043.1|DR816043
EST:     CACGCACTACTCCACCCCGGTTGACATATGGGCCGTTGGCTGCATTTTCG                         CCGAGCTGTTCACTAACCAGCCACTTTTCCCCTGGCGACTCGGAGCTGCAG
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCC-TGGCGACTCGGAGCTGCAG
EST: gi|86468767|gb|DY235137.1|DY235137
EST:     CATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|71303928|gb|DR788084.1|DR788084
EST:     CCCGGTTGACATATGGTCCGTTGGCTGCATTTTTG                         CCGAGCTGGTCACTACCCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|74240146|gb|DT648060.1|DT648060
EST:     CACGCACTTCTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|18179920|gb|BM381130.1|BM381130
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|101384207|gb|EB814148.1|EB814148
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTGGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|31405807|gb|CD484539.1|CD484539
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|89757627|gb|DY687149.1|DY687149
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|76922225|gb|DV168906.1|DV168906
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|78080019|gb|DV508431.1|DV508431
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACT
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACT
EST: gi|60356285|gb|DN223258.1|DN223258
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|93283535|gb|EB675799.1|EB675799
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|71329065|gb|DR801241.1|DR801241
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|86471024|gb|DY237394.1|DY237394
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATGTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|76916678|gb|DV166498.1|DV166498
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGG
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGG
EST: gi|78089074|gb|DV517465.1|DV517465
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|50338053|gb|CO533179.1|CO533179
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|21626004|gb|BQ620925.1|BQ620925
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|74239490|gb|DT647404.1|DT647404
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTACCCCAGCCACTTTTCCCTGTCGACTCGGAGCTGCAG
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACC-AGCCACTTTTCCCTGGCGACTCGGAGCTGCAG
EST: gi|60337212|gb|DN204185.1|DN204185
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|91878044|gb|EB408001.1|EB408001
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|71431252|gb|DR812302.1|DR812302
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|211319987|gb|FK976021.1|FK976021
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|71766503|gb|DR964440.1|DR964440
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|71430256|gb|DR811306.1|DR811306
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|74239489|gb|DT647403.1|DT647403
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|60354544|gb|DN221517.1|DN221517
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|211319986|gb|FK976020.1|FK976020
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|50338054|gb|CO533180.1|CO533180
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGG
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGG
EST: gi|31910221|gb|CD651315.1|CD651315
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|88748411|gb|DY532552.1|DY532552
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
EST: gi|21088773|gb|BQ401086.1|BQ401086
EST:     CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCG                         CCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC
genomic: CACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 280

ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 22

ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 17

ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 44

ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctc ... taaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttagaatccacaccgacacatattacatactctaacctggtgtaaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA
                                ctctaac  putative branch site (score: 44)
                      atattacata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacggtctcgatgaactcagacaccaccgctcaatgcagagtgctttagaatccacaccgacacatattacatactctaacctggtgtaaattgcagCCGAGCTGGTCACTAACCAGCCACTTTTCCCTGGCGACTCGGAGCTGCAGCAGCTGCTCCACATCTTCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT