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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG

Basic information

species Zea mays
transcript GRMZM2G067985_T13
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
aataaaatatggaagtta-aacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttg-------tttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG
        | |  |  |   ||   ||||| | || |      |  |    |     |   |   |   |   |||| | |       | |  ||      ||| |||||||||| || || |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||
--------aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG

upper sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
---aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG
       |  ||    |||   |  ||  ||  |   |    |   |       |  | || | |  || ||   || ||||||| |  ||   | |  ||||||||||| || || ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| ||
attccacacgtacaagagtgggatatacatgcatttctacattaattatga--ccagcattatttccttattggtttgtcttgtt-atgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

upper sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG
|   | | |||   |  | |   |  | ||| ||   |    |   |    |    || | |  || ||  ||| ||||  |||  ||  || |  ||||||||||| || || ||||||||||||||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| ||
acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

upper sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 3
aataaaatatggaagttaaacttaattgttta-catggtgtggctgaagt--ttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG
                         |||| || ||   | || ||  | |  ||| | | |       || | | ||  ||   | | || ||      |||||||||||| | |||||||||||||||||||| |||||||| || || || || || ||||| || || |||||||| |||||||||||||| ||||||||
-----------------------gtttgtatatcaccatctgtcttgattcattcttttataatcacattgttctttccctgaatcaattccttttaaaacagGTATTGTATTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCTGGTCG

upper sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 2
aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG
               ||  |  | |   | |   | |  |   |    |||  |  |    |  || || || |   |   || |||||  ||    ||||||||||  | |||||||||||||||||||| |||||||| || || || || || ||||| || || |||||||| |||||||||||||| || |||||
-------------gtttgtatattaccatctgtcttgattcattc---ttttataatcacatcattctttccctgaatcaattcctttcaaaa----cagGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCAGGTCG

upper sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
aataaaatatggaagttaaacttaattgtttacatggtgtggctga-agtttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG
               ||  | ||   | |  |  || |     | | |||||  || |    || || || || |   |    |||||||| ||   |||||||||||  | |||||||| |||||||| || ||||||||||| || || || || ||||| || |||||||||||||||||||||||||||||||| ||
-------------gtttgtatttg--tatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaa---acagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG

upper sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatctt---gtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG
                      || || ||| ||   | || || || |  |  |||| ||||    ||    |||| |    |  | | | |     | ||||||||||  | |||||||||||||||||||| ||||||||||| || || || || ||||| || |||||||||||||| ||||||||||||||||| ||
-----------------gtttgtacttatttcca---tctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaat-cagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG

upper sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
lower sequence: AT3G18780.1 (Arabidopsis thaliana), 3'ss of exon 2
aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatct-tgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG
                     ||| |   ||  | | | |   ||    | |   ||  || || |||   || | || || |||  ||| || |  ||||||||||| || || |||||||||||||||   ||||||||||| || ||||| || |   | |||||||||||||| || ||| | || |||||||| ||
--------------------gttagtacattttaggcttt--ttgtttatactcattgatcattatttgaactgagctctgattatcttc-cattgaacagGTATTGTGCTGGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGTTTCTCTCTTCCTCATGCCATCCTCCGTCTTGACCTTGCTGGACG

upper sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG
         | |   ||||   |||   |  |    || ||  | |  ||  || | || ||| | ||| | | |  | |||  |||| |  |   ||||||||||| ||||| |||||||||||||||   ||||||||||| || ||||| || ||||| ||||||||||| || |||||| | |||||||| |||||
-------gttagttcttaactctaaacatcca---agtctgagttatattatct-tcttacttgtatttacttaaagtcgttctctttttgta---acagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG

upper sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 4
aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttgtttactttctcaatctac-agGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG
         |     ||||| |    | |||  || |      | |  |||| | | | |  ||  | |  | |   ||  | |||| |||  |  || ||||||||| || || ||||||||||||||||| ||||||||||| ||||| ||||| ||||| ||||| ||||| || |||||| | || |||||||| ||
--------gttcgtattaaaat---ctttttggattggaattttcatttttcttttctgttgttagtgtagcctgagtt-ctaacttgctcctttgactagGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTGCCAATTTATGAAGGTTATGCACTTCCCCATGCTATCCTTCGTCTTGACCTTGCTGGACG

upper sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 2
aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttgtttactttctcaatctac----agGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG
   ||  |   ||| ||   | | | | ||   |      | ||    |||  |||| | || || |||    ||| |  |  | ||| |   | |      |||||||||  | || |||||||||||||| ||||| || ||||| || || ||||||||||| ||||| ||||| || ||||| || || |||||||||||
--aaatttcaagaattttttcctcagtattggtaactgccgactatgattt--tcttatcctgttctttgttatatttactgaagttttttggtgtgtgaaaagGTATTGTCTTGGATTCTGGTGATGGTGTCAGCCATACAGTGCCAATCTATGAAGGATATGCTCTTCCACATGCAATCCTTCGATTAGACCTTGCTGGTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211388697|gb|FK990814.1|FK990814
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGG
EST: gi|71428932|gb|DR809982.1|DR809982
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|61117780|gb|DN558741.1|DN558741
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|67028438|gb|CO457187.1|CO457187
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|22543167|gb|BU093605.1|BU093605
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTC
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTC
EST: gi|5555331|gb|AI881282.1|AI881282
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTG-ACTCGACTCT
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCT
EST: gi|211388698|gb|FK990815.1|FK990815
EST:     TGTTGCAATCCCAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTATGAGC
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGC
EST: gi|211386065|gb|FK990801.1|FK990801
EST:     GTTGCAATCCAAGCGGTGCTCTCACTCTATGCCTAG-GGGCGTACTACTG                         GTATTGTACTCG
genomic: GTTGCAATCCAAGCGGTGCTCTCACTCTATGC-TAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCG
EST: gi|22542171|gb|BU092609.1|BU092609
EST:     GCAATCCAAGCGG-GCTCTCACTTTATGCTAG-GGGCGTACTACTG                         GTATTGTACTCGACTCTGG-GATGG-GTGAGCCACACTGTGCCCATTTACG
genomic: GCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|5268554|gb|AI770518.1|AI770518
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGNACTCGACTCTGGNGATGGTGTGAGCCACACTGGGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|31350149|gb|CD434506.1|CD434506
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|211469316|gb|FL184444.1|FL184444
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|149096000|gb|EE181669.2|EE181669
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|32862856|gb|CF002538.1|CF002538
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|61117779|gb|DN558740.1|DN558740
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|31664016|gb|CD573196.1|CD573196
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACT
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACT
EST: gi|18659298|gb|BM500264.1|BM500264
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATT-ACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|211537826|gb|FL109200.1|FL109200
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|5566909|gb|AI881820.1|AI881820
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|211391342|gb|FK990833.1|FK990833
EST:     TGTTGCAATCCAAGCGGTGCTC--ACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGG-TGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: gi|31354555|gb|CD438912.1|CD438912
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|149081097|gb|EE170200.2|EE170200
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|213172202|gb|FM186044.1|FM186044
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|14202723|gb|BG836400.1|BG836400
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTKGTGATGGTGTGAGC-ACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|31364415|gb|CD448770.1|CD448770
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|148939267|gb|EC883755.2|EC883755
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|211469308|gb|FL184436.1|FL184436
EST:     AGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: AGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|5928698|gb|AW055915.1|AW055915
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGNGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|13490635|gb|BG517399.1|BG517399
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGTCTCACACTGTGCCCATTTA
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAG-C-CACACTGTGCCCATTTA
EST: gi|31250096|gb|CD219120.1|CD219120
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|61117778|gb|DN558739.1|DN558739
EST:     TGCTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|211391337|gb|FK990828.1|FK990828
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|5567005|gb|AI881916.1|AI881916
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGNGCCCATT-ACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|211466787|gb|FL184427.1|FL184427
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACG
EST: gi|29130411|gb|CB381115.1|CB381115
EST:     TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG                         GTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGT
genomic: TGTTGCAATCCAAGCGGTGCTCTCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtttcctctttttcttttttttcccttatcttgtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG
       ctctttttcttttttt  CT-rich tract
        tctttttctttttttt  TA-rich tract