Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA

Basic information

species Zea mays
transcript GRMZM2G067985_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 4
---------gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtatt--atgatgaaac-gaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA
            ||||    |||   |  |||  | |  || |  | |||| ||    ||||   | |   ||||| || | |   |||| ||| |  |||||| | | ||    ||| ||| | ||||||||||||| ||||| |||||||| || |||||||| |||||||| |||||||| |||||||    ||| ||||| |       ||| |   | |   
gtaggaagctcctgttcatctgtagttgctacaat-aattgttaaactttactttctggaacatatgtctcatgattaacctgtggtaacatctaaaatctgttgt-atgtcgtgttggtttgc-agATGTGGATATCAAAGGACGAGTACGACGAATCTGGCCCAGCAATTGTCCACAGGAAATGCTTCTGATTTTCTCAAGTGCTCTGCTCTTGTCATCTGTAGT

upper sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 4
gtatgttgtattgtttatattactttcagctgctgcattttatttctc-tgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCG----CAAGTTCCTCATCGTTGCCTAGTCTCAA
                                  |   ||  ||| || |||| | |   | |  ||    |  ||      ||| | ||   |  |  ||   | | |||  ||||||||||| ||||| |  || || ||||||||||||||  | ||||| |||||||||||||||||   |       |||  |   | ||  ||   | |     
----------------------------------gtgattattttatcatgaattagctctttcgtgtg-tgccattttcattgaatgctaaaaaaa-atgttgt-ggttttgcagATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAACTTCTAAGTACAAAATATGCTTCAATGGTGAATT----

upper sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA04G39380.1 (Glycine max), 3'ss of exon 4
gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCA--AGTTCCTCATCGTTGCCTAGTCTCAA
                 |  |  |||    |  ||||  |||| |||   | | ||| |    || | |   ||  |                  || ||   ||| |||  |||||||||||||| ||||  || || ||||||||||| ||  | ||||| ||||||||||||||||| |      |  | | | | |  | ||  |  | |   
----------------gtgattgttttgtttattgcaaattatctcttcca-cacgtgtaccaattagattgaacta-----------------aacatgtt-ttggttttgcagATGTGGATATCGAAGGGTGAATATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTCCAAAAGAAATGCTTTAATGGTGAGTTATGTT--

upper sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 3
gtatgttgtattgtttatattactttcagctgctgcattttatttctc-tgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA--
                                  |   ||  ||| || | || | |   |   |||          | ||        || ||  |  ||   | | |||  ||||||||||| ||||| |  || || ||||||||||||||  | ||||| |||||||||||||||||  ||||  |||| |   ||      | |   | ||  
----------------------------------gtgattcttttatcattaattagctcttccatgtgtt----ccattttcattgattgctaaaaaatgttgt-ggttttgcagATGTGGATTTCTAAAGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA-CTTC-TAAGTACAAAATATGCTTCAATGGTGAAAT

upper sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 3
gtatgttgtattgtttatattactttcagctgctgcattttatttctctgaactcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttac--cagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA
            ||  | | |  ||| |  || |||   | || |   || | |  || |          |  ||    | | |||       |  | | || || |   |   |||||||||||||| ||||  || |||||||| || || || || |||||||||||||||||||||||   |                               
------------gtaaaaaattgttttatttg-tgcccatgatgtgggtggaatgatagtcaaggagtttgtgat----tgttagtctcagagtctcattccatttaaaaattgcagATGTGGATATCCAAGGGTGAATACGATGAATCCGGTCCTGCCATTGTTCACAGGAAGTGCTTCTAATTT-------------------------------

upper sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 4
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 3'ss of exon 5
--------------------gtatgttgtattgtttatattactttcagctgctgcat-tttatttctctgaa--ctcgtattatgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAG-GCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA---
                     |  |||| |||   | | ||  |||  |        | ||| |||||   ||  ||||  || ||  ||  |   |    |||||   | |  |  |   | |   |  |    |||||||||||  | |||  ||||||||||||||| || ||  ||||||| ||||||||||| |||||| ||   || |    | |||| ||  ||  | |||    
gtaatgtatttgactcgtgtctgagttgcatttcgtgtttttttttatgtcttcatgtctttgtttcttcaaatgctcgcgtt-tgtcgaggctgtaatctttctggaatttaatccg-tttacttgttgtggtgcagATGTGGATTGCGAAGTCGGAGTACGATGAGTCAGGTCCATCAATTGTGCACAGGAAGTGTTTCTAGAGCAGTGCGA----CACATCTTTTGCTTTTTTCAGCAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211469304|gb|FL184432.1|FL184432
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32909718|gb|CF014530.1|CF014530
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTATTTAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|113704038|gb|EE681542.1|EE681542
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|14191270|gb|BG833500.1|BG833500
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60400623|gb|DN233430.1|DN233430
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|4647445|gb|AI622520.1|AI622520
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|6601805|gb|AW256246.1|AW256246
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|116824174|gb|EC867776.1|EC867776
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|33097997|gb|CF057957.1|CF057957
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32934587|gb|CF039399.1|CF039399
EST:     GTGTCTGGATAGGAGGGTCTATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|24770093|gb|CA405222.1|CA405222
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32839111|gb|CD978792.1|CD978792
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTA
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTA
EST: gi|60343482|gb|DN210455.1|DN210455
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|149057032|gb|EE156588.2|EE156588
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATTTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|5108418|gb|AI740131.1|AI740131
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|5608105|gb|AI901772.1|AI901772
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32943685|gb|CF048504.1|CF048504
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|32866364|gb|CF006046.1|CF006046
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|116829080|gb|EC864064.1|EC864064
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|5770162|gb|AI973336.1|AI973336
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32832966|gb|CD972644.1|CD972644
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|33101313|gb|CF061273.1|CF061273
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|5058657|gb|AI737133.1|AI737133
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|14204041|gb|BG837718.1|BG837718
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32836668|gb|CD976346.1|CD976346
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCAAAGGAGGAGTA
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTA
EST: gi|33097013|gb|CF056973.1|CF056973
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|33101525|gb|CF061485.1|CF061485
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|4680853|gb|AI629523.1|AI629523
EST:     CTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: CTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32937465|gb|CF042284.1|CF042284
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|4573340|gb|AI586899.1|AI586899
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|211466788|gb|FL184428.1|FL184428
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCGCTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGCTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|4647444|gb|AI622519.1|AI622519
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCCCTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTCCGATGAGTCTGGCCCGGCAATTGTTCCC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|211466781|gb|FL184421.1|FL184421
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGC
EST: gi|33093620|gb|CF053614.1|CF053614
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATGTCAAG-AGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCT-AAGGAGGAGTAC
EST: gi|32858588|gb|CD998269.1|CD998269
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|78115338|gb|DV533726.1|DV533726
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32928959|gb|CF033771.1|CF033771
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|32945275|gb|CF050094.1|CF050094
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGCATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|116825455|gb|EC869179.1|EC869179
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCAC-TTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32863951|gb|CF003633.1|CF003633
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32866365|gb|CF006047.1|CF006047
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60396171|gb|DN229040.1|DN229040
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|211466783|gb|FL184423.1|FL184423
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|6448428|gb|AW181194.1|AW181194
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|78115337|gb|DV533725.1|DV533725
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60356890|gb|DN223863.1|DN223863
EST:     GTGTTTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATTTAAGGAGGAGTACGATGAGTTTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|5108060|gb|AI739773.1|AI739773
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|37386734|gb|CF630555.1|CF630555
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32839344|gb|CD979025.1|CD979025
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|31363401|gb|CD447758.1|CD447758
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|16919590|gb|BM074264.1|BM074264
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32835411|gb|CD975089.1|CD975089
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCAAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|60355877|gb|DN222850.1|DN222850
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|67027414|gb|CO456163.1|CO456163
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|33093799|gb|CF053793.1|CF053793
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|32848173|gb|CD987854.1|CD987854
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32848296|gb|CD987977.1|CD987977
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32860131|gb|CD999812.1|CD999812
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|5739726|gb|AI947302.1|AI947302
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCCCTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60397376|gb|DN230192.1|DN230192
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|211471836|gb|FL184452.1|FL184452
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|33101828|gb|CF061788.1|CF061788
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|60395421|gb|DN228291.1|DN228291
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32858587|gb|CD998268.1|CD998268
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|6056466|gb|AW090856.1|AW090856
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32835009|gb|CD974687.1|CD974687
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|32837424|gb|CD977102.1|CD977102
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCAAAGGAGGAGTAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTAC
EST: gi|32837212|gb|CD976890.1|CD976890
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTA
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTA
EST: gi|116820761|gb|EC864004.1|EC864004
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32936443|gb|CF041262.1|CF041262
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|60401088|gb|DN233895.1|DN233895
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|29543507|gb|CB603889.1|CB603889
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32860132|gb|CD999813.1|CD999813
EST:     GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
EST: gi|32836528|gb|CD976206.1|CD976206
EST:     GTGTCTGGATAGGAGGGTCGATCCTAGCCTCGCTCAGCACTTTCCAACAG                         ATGTGGATATCAAAGGAGGAGT
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGT
EST: gi|211466782|gb|FL184422.1|FL184422
EST:     GTGTCTGGATAGGAGGGTCCACCCTAGCCTCGCTGAGCACTTTCCAACAG                         ATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC
genomic: GTGTCTGGATAGGAGGGTCCATCCTAGCCTCGCTGAGCACTTTCCAACAGgtatgttgta ... gatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatgaaacgaaataacttctgagttctgttatgacgtgcccttgatttaccagATGTGGATATCTAAGGAGGAGTACGATGAGTCTGGCCCGGCAATTGTTCACAGGAAGTGCTTCTAGGCTTCGCAAGTTCCTCATCGTTGCCTAGTCTCAA
           aaataactt  TA-rich tract