1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaaatgagtataatatatcaagaataaataatgggaagttaaaacttaattgtttacatggtgtggctggtgtttcctctttttttttctcaatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTC
species | Zea mays |
transcript | GRMZM2G067985_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGCTAGTGGGCGTACTACTG GTATTGTTC-TTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACEST: gi|31355571|gb|CD439928.1|CD439928
genomic: TATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTG GTATTGTTCTT-GACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACEST: gi|211469310|gb|FL184438.1|FL184438
genomic: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: TATGCTAGTGGGCGTACTACTG GTATTGTTC-TTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACEST: gi|87156786|gb|DY401575.1|DY401575
genomic: TATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTG GTATTGTTCTT-GACTCTGGTGATGGTGTGAGCCACACTGTGCCCCTTTTAEST: gi|23199688|gb|BU582253.1|BU582253
genomic: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTT-A
EST: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTG GTATTGTTCTT-GACTCTGGTGATGGTGTGAGCCACACTGTGCEST: gi|67031467|gb|CO460216.1|CO460216
genomic: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGC
EST: TGTTGCAATCCAAGCAGTGCTCTCACTCTATGCTAGTGGGCGTACTACTG GTATTGTTC-TTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACEST: gi|211466785|gb|FL184425.1|FL184425
genomic: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTG GTATTGTTCTT-GACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACEST: gi|5325045|gb|AI783236.1|AI783236
genomic: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: GCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTG GTATTGTTC-TTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACEST: gi|211466786|gb|FL184426.1|FL184426
genomic: GCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: TATGCTAGTGGGCGTACTACTG GTATTGTTC-TTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACEST: gi|32850906|gb|CD990587.1|CD990587
genomic: TATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTG GTATTGTTCTT-GACTCTGEST: gi|211471834|gb|FL184450.1|FL184450
genomic: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTG
EST: TATGCTAGTGGGCGTACTACTG GTATTGTTC-TTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACEST: gi|5846857|gb|AI999940.1|AI999940
genomic: TATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: GCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTG GTATTGNTC-TTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACEST: gi|116815584|gb|EC858264.1|EC858264
genomic: GCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTG GTATTGTTC-TTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACEST: gi|62550511|gb|DN830931.1|DN830931
genomic: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: GTGGGCGTACTGCTG GTATTGTTC-TTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACEST: gi|23357518|gb|BU645167.1|BU645167
genomic: GTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: TGGTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTG GGATTGGTC-TTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACEST: gi|193502480|gb|AM937802.1|AM937802
genomic: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
EST: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTG GTATTGTTCTT-GACTCTGGTGATGGTGTGAGCCACACTGTGACCATTTAC
genomic: TGTTGCAATCCAAGCAGTTCTATCACTCTATGCTAGTGGGCGTACTACTGgtatgacctg ... caatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTAC
ttaattgtttacatggtgtggctggtgtttcctctttttttttctcaatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTC
acttaat putative branch site (score: 115)
tgtttcctcttttttt putative PPT
tttttttttctcaat TA-rich tract