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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttttttatttttctaatgataaagccattgatggctttgttttctcattcccttttgttcttgctgacaatgggcaattttacactgatattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTTCTTGGCAATGGTCTAGTGGCCATTGTTGCTGGCCTATTTGCAAATTTTC

Basic information

species Zea mays
transcript GRMZM2G067638_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067638_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g37520.1 (Oryza sativa), 3'ss of exon 3
---tcttttttatttttctaatgata--aagccattgatggctttgttttctcattcccttttgttcttgctgacaatgggcaattttacactgatattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTTCTTGGCAATGGTCTAGTGGCCATTGTTGCTGGCCTATTTGCAAATTTTC
    |     |  ||  ||| | | |  || |  ||  |    |  |||    ||||||||   |   || ||||| ||  ||| | |||  ||    |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||  | ||||| |||||||||||| | |
tctacgaaactgattaactagttacagcaatcttttattcaaatcttttgggaattcccttgattatctgttgacactg--caaatctaccttg---ctgtacagAGAGGATTTGACCCACAGTGGTTGTCGATAACATTCTCCAAGGCTATATTTCTTGGAAATGGCCTAGTTGCGATCATCGCTGGGCTATTTGCAAATCTGC

upper sequence: GRMZM2G067638_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA04G41090.1 (Glycine max), 3'ss of exon 3
---tcttttttatttttctaatgataaagccattgatggctttgttttctcattcccttttgttcttgctgacaatgggcaattttacactgatattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTTCTTGGCAATGGTCTAGTGGCCATTGTTGCTGGCCTATTTGCAAATTTTC
   |  ||   || ||| |  |  |   |   |||||  |   |||   |  |    || || |  ||       |  |   ||||      | ||||| ||||  || ||||||| ||||||| ||||  |||||||||| ||||||||||||||||| |||||||| || || ||| |  |||| || |||| |||| | |
ttcttattacaatgttttttttttttttggtcttgatatccgggttacgttgtctatttatgattctg--agttgtctgtttttttttttaaacattgt-cagAGGGGCTTTGATCAACAATGGCTGTCATTAACATTCTCTAAGGCTATATTTCTTGGAAATGGTCTTGTTGCTATTTTGTCTGGGCTGTTTGGAAATGTAC

upper sequence: GRMZM2G067638_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA06G13760.2 (Glycine max), 3'ss of exon 3
tcttttttatttttctaatgataaagccattgatggctttgttttc----tcattcccttttgttcttgctgacaatgggcaat---tttacactgatattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTTCTTGGCAATGGTCTAGTGGCCATTGTTGCTGGCCTATTTGCAAATTTTC
     | |||  ||||  | | ||     ||  |||  ||||||||    |  || | || |||  ||  |||   ||         |||      | || || ||||  || ||||||| ||||||| | ||  |||||||||| ||||||||||||||||| |||||||| || || ||| |  |||| || |||| |||| | |
----gtgtatacttcttgttacaatttttttt-tggtcttgttttccttcttgttacgttgtgtattta-tgattctgaattgcctgtttttttaaacatcgt-cagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTTCTTGGAAATGGTCTTGTTGCTATTTTGTCTGGGCTGTTTGGAAATGTAC

upper sequence: GRMZM2G067638_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv02s0025g02420.t01 (Vitis vinifera), 3'ss of exon 3
-----tcttttttatttttctaatgataaagccattgatggctttgttttctcattcccttttgttcttgctgacaatgggcaattttacactgatattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTTCTTGGCAATGGTCTAGTGGCCATTGTTGCTGGCCTATTTGCAAATTTTC
          ||  | |   |||    ||     | |       |||| | |  ||   || | || | | ||    |     ||| |   |     |||| ||||  || ||||| | ||| ||| ||||  | |||||||| ||||| ||||||||||||||||||||| | |||||| |  ||||  | |||| |||| | |
aaaaaaagccttcgtgtggttaacttcaagtagttgggatataatgttgtgttgttttgttatattat-gttggttctt----attgtgttccttgcttgtgcagAGGGGTTTTGAACAACAGTGGCTGTCACTTACATTCTCTAAGGCAATATTTCTTGGCAATGGTCTAATTGCCATTCTGTCTGGATTGTTTGGAAATGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148937993|gb|EC882231.2|EC882231
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|149078165|gb|EE166914.2|EE166914
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|149098188|gb|EE184151.2|EE184151
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|149080881|gb|EE169963.2|EE169963
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|78078181|gb|DV506596.1|DV506596
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211140838|gb|FL096993.1|FL096993
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAG-ACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|149111263|gb|EE294760.2|EE294760
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|148938846|gb|EC883192.2|EC883192
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211140841|gb|FL096996.1|FL096996
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAG-ACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATAT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATAT
EST: gi|148962684|gb|EE013586.2|EE013586
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|148994269|gb|EE034028.2|EE034028
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211491927|gb|FL096954.1|FL096954
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAG-ATTTGATCCACAA
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAA
EST: gi|211140847|gb|FL097002.1|FL097002
EST:     CTGCTCTTCTCAGCNGTTTGAGTCGTGGNCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCAACAATGGTTGTCGATAACATTCTCCAAGGCTATATT
genomic: CTGCTCTTCTCAGC-GTTTGAGTCGTGG-CTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCA-CAATGGTTGTCGATAACATTCTCCAAGGCTATATT
EST: gi|149050412|gb|EE155659.2|EE155659
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211143708|gb|FL097028.1|FL097028
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|148931291|gb|EC874134.2|EC874134
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211497696|gb|FL096979.1|FL096979
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGGTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211491929|gb|FL096956.1|FL096956
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|149078701|gb|EE167498.2|EE167498
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|149071328|gb|EE159722.2|EE159722
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|76916502|gb|DV166417.1|DV166417
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211497705|gb|FL096988.1|FL096988
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATT-GATCCACAATGGTTGTCGA
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGA
EST: gi|76014974|gb|DT942144.1|DT942144
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211491925|gb|FL096952.1|FL096952
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCAACA-TGGTTGCCGATAACATTCTCCCAGCCTATATT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCA-CAATGGTTGTCGATAACATTCTCCAAGGCTATATT
EST: gi|149076217|gb|EE164814.2|EE164814
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|78117636|gb|DV536023.1|DV536023
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|31558530|gb|CD527742.1|CD527742
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGGGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCT
EST: gi|211143712|gb|FL097032.1|FL097032
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTC-----AGAGCACAACAAG                         AAAGGATTTGATCC
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCC
EST: gi|211140844|gb|FL096999.1|FL096999
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAATAAG                         AAAGGGATT-GATCCCACA-TGGTTGTCGATAACAT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGG-ATTTGATCC-ACAATGGTTGTCGATAACAT
EST: gi|211140840|gb|FL096995.1|FL096995
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211497700|gb|FL096983.1|FL096983
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211143711|gb|FL097031.1|FL097031
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|101390761|gb|EB817315.1|EB817315
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGGTTGTCGATAACATTCTCCAAGGGTATATT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGG-TTGTCGATAACATTCTCCAAGGCTATATT
EST: gi|149076647|gb|EE165285.2|EE165285
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211143705|gb|FL097025.1|FL097025
EST:     GCTGCTCTTCTCAGCNGTT-GAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGNTGTCGATAACATTCTCCAAGGCTATATTT
genomic: GCTGCTCTTCTCAGC-GTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211142275|gb|FL097012.1|FL097012
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGC-GAGCACAACA-G                         AAAGGGATTTGATCCACA-TGGGTGTCGAT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGG-ATTTGATCCACAATGGTTGTCGAT
EST: gi|211491934|gb|FL096961.1|FL096961
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATT
EST: gi|211142276|gb|FL097013.1|FL097013
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAG                         AAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTT
EST: gi|211497698|gb|FL096981.1|FL096981
EST:     CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACA-CAAG                         AAAGGGATT-GATCCCACA-TGGTTGTCGATAACATTCTCCCAGGCTATAT
genomic: CGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGG-ATTTGATCC-ACAATGGTTGTCGATAACATTCTCCAAGGCTATAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 138

CCAGTACAAAGTTCTTATGATTGGGCGTGTCCTTGGTGGCATTGCCACTTCGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTTCTTGGCAATGGTCTAGTGGCCATTGTTGCTGGCCTATTTGCAAATTTTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 91

CCAGTACAAAGTTCTTATGATTGGGCGTGTCCTTGGTGGCATTGCCACTTCGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTTCTTGGCAATGGTCTAGTGGCCATTGTTGCTGGCCTATTTGCAAATTTTC


Block sizes: 48 (upstream exon), 46 (downstream exon)
Score: 50

CCAGTACAAAGTTCTTATGATTGGGCGTGTCCTTGGTGGCATTGCCACTTCGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTTCTTGGCAATGGTCTAGTGGCCATTGTTGCTGGCCTATTTGCAAATTTTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 167

CCAGTACAAAGTTCTTATGATTGGGCGTGTCCTTGGTGGCATTGCCACTTCGCTGCTCTTCTCAGCGTTTGAGTCGTGGCTCGTGGCAGAGCACAACAAGgtagctgccc ... tattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTTCTTGGCAATGGTCTAGTGGCCATTGTTGCTGGCCTATTTGCAAATTTTC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcattcccttttgttcttgctgacaatgggcaattttacactgatattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTTCTTGGCAATGGTCTAGTGGCCATTGTTGCTGGCCTATTTGCAAATTTTC
                                aattttaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcttttttatttttctaatgataaagccattgatggctttgttttctcattcccttttgttcttgctgacaatgggcaattttacactgatattgtacagAAAGGATTTGATCCACAATGGTTGTCGATAACATTCTCCAAGGCTATATTTCTTGGCAATGGTCTAGTGGCCATTGTTGCTGGCCTATTTGCAAATTTTC

- - - - - - - - - - - - - - attgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacactg